Sequence and phylogenetic analysis of hepatitis B virus genotype G isolated in Germany

被引:81
作者
Vieth, S
Manegold, C
Drosten, C
Nippraschk, T
Günther, S
机构
[1] Bernhard Nocht Inst Trop Med, Dept Virol, D-20359 Hamburg, Germany
[2] Bernhard Nocht Inst Trop Med, Clin Dept, D-20359 Hamburg, Germany
关键词
complete genome; genetic diversity; genotype; hepatitis B virus; human immunodeficiency virus; phylogenetic analysis;
D O I
10.1023/A:1014572600432
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Genotype G of hepatitis B virus (HBV) has only recently been discovered. This report describes the full-length sequence of genotype G HBV (designated 235/01) isolated in Germany from a chronic HBV carrier. The patient was hepatitis B e antigen-positive, had high HBV DNA levels of about 10(1)0 copies/ml serum, lacked a measurable anti-HBc response, and was coinfected with human immunodeficiency virus type 1. Genome 235/01 showed characteristic genotype G-specific features: stop codons at codon 2 and 28 of the pre-C region and insertion of 36 nucleotides at the 5' end of the C gene. It was nearly identical (greater than or equal to99.7% identity) to both genotype G genomes (B1-89 and FR1 from France) described so far, suggesting either close epidemiological link among European genotype G isolates or high genetic stability of genotype G.
引用
收藏
页码:153 / 156
页数:4
相关论文
共 13 条
[1]   MOLECULAR CHARACTERIZATION OF A NEW VARIANT OF HEPATITIS-B VIRUS IN A PERSISTENTLY INFECTED HOMOSEXUAL MAN [J].
BHAT, RA ;
ULRICH, PP ;
VYAS, GN .
HEPATOLOGY, 1990, 11 (02) :271-276
[2]   High degree of conservation in the hepatitis B virus core gene during the immune tolerant phase in perinatally acquired chronic hepatitis B virus infection [J].
Bozkaya, H ;
Akarca, US ;
Ayola, B ;
Lok, ASF .
JOURNAL OF HEPATOLOGY, 1997, 26 (03) :508-516
[3]   Evaluation of a new PCR assay with competitive internal control sequence for blood donor screening [J].
Drosten, C ;
Weber, M ;
Seifried, E ;
Roth, WK .
TRANSFUSION, 2000, 40 (06) :718-724
[4]  
Felsenstein J, 1995, PHYLIP PHYLOGENY INF
[5]   Analysis of hepatitis B virus populations in an interferon-α-treated patient reveals predominant mutations in the C-gene and changing e-antigenicity [J].
Günther, S ;
Paulij, W ;
Meisel, H ;
Will, H .
VIROLOGY, 1998, 244 (01) :146-160
[6]  
Günther S, 1998, J CLIN MICROBIOL, V36, P531
[7]   In vivo selection of a hepatitis B virus mutant with abnormal viral protein expression [J].
Kremsdorf, D ;
Garreau, F ;
Capel, F ;
Petit, MA ;
Brechot, C .
JOURNAL OF GENERAL VIROLOGY, 1996, 77 :929-939
[8]   THE NUCLEOCAPSID OF HEPATITIS-B VIRUS IS BOTH A T-CELL INDEPENDENT AND A T-CELL-DEPENDENT ANTIGEN [J].
MILICH, DR ;
MCLACHLAN, A .
SCIENCE, 1986, 234 (4782) :1398-1401
[9]   Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites [J].
Nielsen, H ;
Engelbrecht, J ;
Brunak, S ;
vonHeijne, G .
PROTEIN ENGINEERING, 1997, 10 (01) :1-6
[10]   COMPLETE GENOMES, PHYLOGENETIC RELATEDNESS, AND STRUCTURAL PROTEINS OF 6 STRAINS OF THE HEPATITIS-B VIRUS, 4 OF WHICH REPRESENT 2 NEW GENOTYPES [J].
NORDER, H ;
COUROUCE, AM ;
MAGNIUS, LO .
VIROLOGY, 1994, 198 (02) :489-503