The Making of a Slicer: Activation of Human Argonaute-1

被引:97
作者
Faehnle, Christopher R. [1 ]
Elkayam, Elad [1 ,2 ]
Haase, Astrid D. [2 ]
Hannon, Gregory J. [2 ]
Joshua-Tor, Leemor [2 ]
机构
[1] Cold Spring Harbor Lab, WM Keck Struct Biol Lab, Cold Spring Harbor, NY 11724 USA
[2] Cold Spring Harbor Lab, Howard Hughes Med Inst, Cold Spring Harbor, NY 11724 USA
来源
CELL REPORTS | 2013年 / 3卷 / 06期
关键词
CRYSTAL-STRUCTURE; STRUCTURAL BASIS; SILENCING COMPLEX; RNA RECOGNITION; GUIDE RNA; RISC; CLEAVAGE; INSIGHTS; DOMAIN; CORE;
D O I
10.1016/j.celrep.2013.05.033
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Argonautes are the central protein component in small RNA silencing pathways. Of the four human Argonautes (hAgo1-hAgo4) only hAgo2 is an active slicer. We determined the structure of hAgo1 bound to endogenous copurified RNAs to 1.75 angstrom resolution and hAgo1 loaded with let-7 microRNA to 2.1 angstrom. Both structures are strikingly similar to the structures of hAgo2. A conserved catalytic tetrad within the PIWI domain of hAgo2 is required for its slicing activity. Completion of the tetrad, combined with a mutation on a loop adjacent to the active site of hAgo1, results in slicer activity that is substantially enhanced by swapping in the N domain of hAgo2. hAgo3, with an intact tetrad, becomes an active slicer by swapping the N domain of hAgo2 without additional mutations. Intriguingly, the elements that make Argonaute an active slicer involve a sophisticated interplay between the active site and more distant regions of the enzyme.
引用
收藏
页码:1901 / 1909
页数:9
相关论文
共 38 条
[1]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[2]  
Bieniossek Christoph, 2008, Curr Protoc Protein Sci, VChapter 5, DOI 10.1002/0471140864.ps0520s51
[3]   Crystal structure of the MID-PIWI lobe of a eukaryotic Argonaute protein [J].
Boland, Andreas ;
Huntzinger, Eric ;
Schmidt, Steffen ;
Izaurralde, Elisa ;
Weichenrieder, Oliver .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (26) :10466-10471
[4]  
Brennecke J, 2007, CELL, V128, P1089, DOI 10.1016/j.cell.2007.01.043
[5]   Argonaute proteins [J].
Cenik, Elif Sarinay ;
Zamore, Phillip D. .
CURRENT BIOLOGY, 2011, 21 (12) :R446-R449
[6]   Small RNA sorting: matchmaking for Argonautes [J].
Czech, Benjamin ;
Hannon, Gregory J. .
NATURE REVIEWS GENETICS, 2011, 12 (01) :19-31
[7]  
Elkayam E, 2012, CELL, V150, P100, DOI 10.1016/j.cell.2012.05.017
[8]   Features and development of Coot [J].
Emsley, P. ;
Lohkamp, B. ;
Scott, W. G. ;
Cowtan, K. .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2010, 66 :486-501
[9]   Structural basis for 5′-nucleotide base-specific recognition of guide RNA by human AGO2 [J].
Frank, Filipp ;
Sonenberg, Nahum ;
Nagar, Bhushan .
NATURE, 2010, 465 (7299) :818-822
[10]  
Hauptmann J, 2013, NAT STRUCT MOL BIOL