On graphical and numerical representation of protein sequences

被引:56
作者
Bai, FL [1 ]
Wang, TM
机构
[1] Dalian Univ Technol, Dept Appl Math, Dalian 116024, Peoples R China
[2] Hainan Normal Univ, Dept Math, Haikou 571158, Peoples R China
基金
中国国家自然科学基金;
关键词
amino acid; protein sequence; graphic representation;
D O I
10.1080/07391102.2006.10507078
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A new approach using a 3-D Cartesian coordinate system to represent protein sequences has been derived. By the 3-D Graphical representation we make a comparison of sequences belonging to nine different proteins.
引用
收藏
页码:537 / 545
页数:9
相关论文
共 21 条
[1]   A novel 2-D graphical representation of DNA sequences of low degeneracy [J].
Guo, XF ;
Randic, M ;
Basak, SC .
CHEMICAL PHYSICS LETTERS, 2001, 350 (1-2) :106-112
[2]  
LEONG PM, 1995, COMPUT APPL BIOSCI, V11, P503
[3]  
Li C, 2005, J CHEM INF MODEL, V45, P115, DOI 10.1021/ci0498741
[4]   Analysis of similarity/dis similarity of DNA sequences based on 3-D graphical representation [J].
Liao, B ;
Wang, TM .
CHEMICAL PHYSICS LETTERS, 2004, 388 (1-3) :195-200
[5]  
LIAO B, J THEORETICAL BIOL
[6]   On the uniqueness of quantitative DNA difference descriptors in 2D graphical representation models [J].
Nandy, A ;
Nandy, P .
CHEMICAL PHYSICS LETTERS, 2003, 368 (1-2) :102-107
[7]  
NANDY A, 1994, CURR SCI INDIA, V66, P309
[8]   Characterization of DNA primary sequences based on the average distances between bases [J].
Randic, M ;
Basak, SC .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2001, 41 (03) :561-568
[9]   Novel matrix invariants for characterization of changes of proteomics maps [J].
Randic, M ;
Zupan, J ;
Novic, M ;
Gute, BD ;
Basak, SC .
SAR AND QSAR IN ENVIRONMENTAL RESEARCH, 2002, 13 (7-8) :689-703
[10]   On characterization of dose variations of 2-D proteomics maps by matrix invariants [J].
Randic, M ;
Novic, M ;
Vracko, M .
JOURNAL OF PROTEOME RESEARCH, 2002, 1 (03) :217-226