Homology modelling of human cytochromes P450 involved in xenobiotic metabolism and rationalization of substrate selectivity

被引:32
作者
Lewis, DFV [1 ]
机构
[1] Univ Surrey, Sch Biol Sci, Guildford GU2 5XH, Surrey, England
关键词
cytochromes P450; xenobiotic metabolism; substrate selectivity; selectivity; substrate; CYP102;
D O I
10.1016/S0940-2993(99)80024-4
中图分类号
R36 [病理学];
学科分类号
100104 ;
摘要
Molecular modelling of human cytochrome P450 (CYP) isoforms is described, based on amino acid sequence homology with a unique bacterial P450 (CYP102) of known crystal structure. It is found that for the human hepatic P450s involved in the metabolism of xenobiotics, ie. CYP1A2, CYP 1 A6, CYP2B6, CYP2C9, CYP2C 19, CYP2D6, CYP2E 1 and CYP3A4, there is a satisfactory agreement between specific substrate characteristics and topographical features of the putative active sites, including complementarity with key amino acid residues in the P450 haem environments. A combination of homology model interactions with substrates and certain molecular properties of the compounds themselves provides a methodology for the evaluation of potential P450 selectivity in new chemical entities (NCEs).
引用
收藏
页码:369 / 374
页数:6
相关论文
共 22 条
[1]  
GOTOH O, 1992, J BIOL CHEM, V267, P83
[2]   Cytochrome P450 proteins and potential utilization in biodegradation [J].
Guengerich, FP .
ENVIRONMENTAL HEALTH PERSPECTIVES, 1995, 103 :25-28
[3]   Xenobiotic-metabolizing cytochrome P450 enzymes in the human feto-placental unit: Role in intrauterine toxicity [J].
Hakkola, J ;
Pelkonen, O ;
Pasanen, M ;
Raunio, H .
CRITICAL REVIEWS IN TOXICOLOGY, 1998, 28 (01) :35-72
[4]   CLONING AND EXPRESSION OF CYTOCHROME-P450 GENES-CONTROLLING FLOWER COLOR [J].
HOLTON, TA ;
BRUGLIERA, F ;
LESTER, DR ;
TANAKA, Y ;
HYLAND, CD ;
MENTING, JGT ;
LU, CY ;
FARCY, E ;
STEVENSON, TW ;
CORNISH, EC .
NATURE, 1993, 366 (6452) :276-279
[5]   Identification of residues 99, 220, and 221 of human cytochrome P450 2C19 as key determinants of omeprazole hydroxylase activity [J].
Ibeanu, GC ;
Ghanayem, BI ;
Linko, P ;
Li, LP ;
Pedersen, LG ;
Goldstein, JA .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1996, 271 (21) :12496-12501
[6]   COMPETITIVE-INHIBITION OF COUMARIN 7-HYDROXYLATION BY PILOCARPINE AND ITS INTERACTION WITH MOUSE CYP 2A5 AND HUMAN CYP 2A6 [J].
KINONEN, T ;
PASANEN, M ;
GYNTHER, J ;
POSO, J ;
JARVINEN, T ;
ALHAVA, E ;
JUVONEN, RO .
BRITISH JOURNAL OF PHARMACOLOGY, 1995, 116 (06) :2625-2630
[7]   Molecular modelling and quantitative structure-activity relationship studies on the interaction of omeprazole with cytochrome P450 isozymes [J].
Lewis, DFV ;
Lake, BG .
TOXICOLOGY, 1998, 125 (01) :31-44
[8]   Molecular modelling of human CYP2C subfamily enzymes CYP2C9 and CYP2C19: rationalization of substrate specificity and site-directed mutagenesis experiments in the CYP2C subfamily [J].
Lewis, DFV ;
Dickins, M ;
Weaver, RJ ;
Eddershaw, PJ ;
Goldfarb, PS ;
Tarbit, MH .
XENOBIOTICA, 1998, 28 (03) :235-268
[9]   Molecular modelling of CYP1A subfamily members based on an alignment with CYP102: Rationalization of CYP1A substrate specificity in terms of active site amino acid residues [J].
Lewis, DFV ;
Lake, BG .
XENOBIOTICA, 1996, 26 (07) :723-753
[10]  
Lewis DFV, 1996, XENOBIOTICA, V26, P1067