PRIDE: Quality control in a proteomics data repository

被引：31

作者：

Csordas, Attila ^{[1
]}

Ovelleiro, David ^{[1
]}

Wang, Rui ^{[1
]}

Foster, Joseph M. ^{[1
]}

Rios, Daniel ^{[1
]}

Vizcaino, Juan Antonio ^{[1
]}

Hermjakob, Henning ^{[1
]}

机构：

[1] European Bioinformat Inst EBI, EMBL Outstn, Cambridge CB10 1SD, England

来源：

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | 2012年

基金：

英国惠康基金;

关键词：

STANDARD;

D O I：

10.1093/database/bas004

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The PRoteomics IDEntifications (PRIDE) database is a large public proteomics data repository, containing over 270 million mass spectra (by November 2011). PRIDE is an archival database, providing the proteomics data supporting specific scientific publications in a computationally accessible manner. While PRIDE faces rapid increases in data deposition size as well as number of depositions, the major challenge is to ensure a high quality of data depositions in the context of highly diverse proteomics work flows and data representations. Here, we describe the PRIDE curation pipeline and its practical application in quality control of complex data depositions.

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页数：8

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