Arenibacter gen. nov., new genus of the family Flavobacteriaceae and description of a new species, Arenibacter latericius sp nov.

被引:61
作者
Ivanova, EP
Nedashkovskaya, OI
Chun, J
Lysenko, AM
Frolova, GM
Svetashev, VI
Vysotskii, MV
Mikhailov, VV
Huq, A
Colwell, RR
机构
[1] Univ Maryland, Inst Biotechnol, Ctr Marine Biotechnol, Baltimore, MD 21202 USA
[2] Russian Acad Sci, Pacific Inst Bioorgan Chem, Far Eastern Branch, Vladivostok 159, Russia
[3] Seoul Natl Univ, Sch Biol Sci, Seoul 151742, South Korea
[4] Russian Acad Sci, Inst Microbiol, Moscow 117811, Russia
[5] Russian Acad Sci, Inst Marine Biol, Far Eastern Branch, Vladivostok 690041, Russia
[6] Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA
关键词
Flavobacteriaceae; Arenibacter latericius;
D O I
10.1099/00207713-51-6-1987
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Five dark-orange-pigmented, Gram-negative, rod-shaped, non-motile, aerobic bacterial strains were isolated from sandy sediment samples collected in the South China Sea in the Indian ocean, from a holothurian, Apostichopus japonicus, in the Sea of Japan and from a brown alga, Chorda filum, from the Sea of Okhotsk in the Pacific Ocean. Phenotypic data were collected, demonstrating that the bacteria are chemo-organotrophic and require seawater-based media for growth. Polar lipids were analysed and 27% of the total extract comprised phosphatidylethanolamine as the major component. The predominant cellular fatty acids were branched-chain saturated and unsaturated [i-C15:0, i-C15:1, a-C15:0, C15:0, C16:1(n-7)]. The DNA base composition was 37.5-38.2 mol % G+C. The level of DNA homology of the five isolates was 83-94%, indicating that these isolates belong to the same species. A 16S rDNA sequence of the type strain KMM 426(T) was determined and phylogenetic analysis, based on neighbour-joining and Fitch-Margoliash methods, revealed that the type strain formed a distinct phyletic line in a clade corresponding to the family Flavobacteriaceae and represented a new genus. From the results of this polyphasic taxonomic analysis, it is proposed that the bacterial strains be classified in a new genus, Arenibacter gen. nov., and species, Arenibacter latericius sp. nov. The type strain is KMM 426(T) (VKM B 2137D(T) = LMG 19694(T) = CIP 106861(T)).
引用
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页码:1987 / 1995
页数:9
相关论文
共 38 条
[1]  
Bakunina I. Yu., 1996, Prikladnaya Biokhimiya i Mikrobiologiya, V32, P624
[2]   Cutting a gordian knot: Emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom nov (basonym, Cytophaga aquatilis Strohl and Tait 1978) [J].
Bernardet, JF ;
Segers, P ;
Vancanneyt, M ;
Berthe, F ;
Kersters, K ;
Vandamme, P .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1996, 46 (01) :128-148
[3]  
BLIGH EG, 1953, CAN J BIOCH PHYSL, V7, P911
[4]   THE TAXONOMIC RELATIONSHIP OF CERTAIN ENVIRONMENTAL FLAVOBACTERIA TO THE GENUS WEEKSELLA [J].
BOTHA, WC ;
JOOSTE, PJ ;
BRITZ, TJ .
JOURNAL OF APPLIED BACTERIOLOGY, 1989, 67 (05) :551-559
[5]   Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov. [J].
Bowman, JP ;
McCammon, SA ;
Lewis, T ;
Skerratt, JH ;
Brown, JL ;
Nichols, DS ;
McMeekin, TA .
MICROBIOLOGY-UK, 1998, 144 :1601-1609
[6]   Psychroserpens burtonensis gen. nov, sp. nov, and Gelidibacter algens gen. nov, sp. nov, psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats [J].
Bowman, JP ;
McCammon, SA ;
Brown, JL ;
Nichols, PD ;
McMeekin, TA .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (03) :670-677
[7]   Diversity and association of psychrophilic bacteria in Antarctic sea ice [J].
Bowman, JP ;
McCammon, SA ;
Brown, MV ;
Nichols, DS ;
McMeekin, TA .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1997, 63 (08) :3068-3078
[8]   A PHYLOGENETIC ANALYSIS OF THE GENUS NOCARDIA WITH 16S RIBOSOMAL-RNA GENE-SEQUENCES [J].
CHUN, JS ;
GOODFELLOW, M .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1995, 45 (02) :240-245
[9]  
DELEY J, 1970, EUR J BIOCHEM, V12, P133
[10]  
FAUTZ E, 1980, FEMS MICROBIOL LETT, V8, P87, DOI 10.1111/j.1574-6968.1980.tb05056.x