The Emerging Paradigm of Network Medicine in the Study of Human Disease

被引:135
作者
Chan, Stephen Y. [1 ]
Loscalzo, Joseph [1 ]
机构
[1] Harvard Univ, Brigham & Womens Hosp, Sch Med, Div Cardiovasc Med,Dept Med, Boston, MA 02115 USA
关键词
network medicine; systems biology; cardiovascular disease; systems pharmacology; GENE-EXPRESSION; SYSTEMS PHARMACOLOGY; SENSITIVITY-ANALYSIS; BIOLOGY APPROACH; IDENTIFICATION; TARGET; MAP; CLASSIFICATION; TRANSCRIPTOME; INFORMATION;
D O I
10.1161/CIRCRESAHA.111.258541
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
The molecular pathways that govern human disease consist of molecular circuits that coalesce into complex, overlapping networks. These network pathways are presumably regulated in a coordinated fashion, but such regulation has been difficult to decipher using only reductionistic principles. The emerging paradigm of "networkmedicine" proposes to utilize insights garnered from network topology (eg, the static position of molecules in relation to their neighbors) as well as network dynamics (eg, the unique flux of information through the network) to understand better the pathogenic behavior of complex molecular interconnections that traditional methods fail to recognize. As methodologies evolve, network medicine has the potential to capture the molecular complexity of human disease while offering computational methods to discern how such complexity controls disease manifestations, prognosis, and therapy. This review introduces the fundamental concepts of network medicine and explores the feasibility and potential impact of network-based methods for predicting individual manifestations of human disease and designing rational therapies. Wherever possible, we emphasize the application of these principles to cardiovascular disease. (Circ Res. 2012;111:359-374.)
引用
收藏
页码:359 / 374
页数:16
相关论文
共 108 条
[1]  
Achenbach J, 2011, FUTURE MED CHEM, V3, P961, DOI [10.4155/FMC.11.62, 10.4155/fmc.11.62]
[2]   Ranking Genes by Their Co-expression to Subsets of Pathway Members [J].
Adler, Priit ;
Peterson, Hedi ;
Agius, Phaedra ;
Reimand, Jueri ;
Vilo, Jaak .
CHALLENGES OF SYSTEMS BIOLOGY: COMMUNITY EFFORTS TO HARNESS BIOLOGICAL COMPLEXITY, 2009, 1158 :1-13
[3]   Tools for kinetic modeling of biochemical networks [J].
Alves, Rui ;
Antunes, Fernando ;
Salvador, Armindo .
NATURE BIOTECHNOLOGY, 2006, 24 (06) :667-672
[4]  
[Anonymous], 2011, SCI TRANSL MED
[5]  
[Anonymous], 1996, REGULATION CELLULAR, DOI DOI 10.1007/978-1-4613-1161-4
[6]   Systems pharmacology, pharmacogenetics, and clinical trial design in network medicine [J].
Antman, Elliott ;
Weiss, Scott ;
Loscalzo, Joseph .
WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE, 2012, 4 (04) :367-383
[7]   Network analysis of human in-stent restenosis [J].
Ashley, Euan A. ;
Ferrara, Rossella ;
King, Jennifer Y. ;
Vailaya, Aditya ;
Kuchinsky, Allan ;
He, Xuanmin ;
Byers, Blake ;
Gerckens, Ulrich ;
Oblin, Stefan ;
Tsalenko, Anya ;
Soito, Angela ;
Spin, Joshua M. ;
Tabibiazar, Raymond ;
Connolly, Andrew J. ;
Simpson, John B. ;
Grube, Eberhard ;
Quertermous, Thomas .
CIRCULATION, 2006, 114 (24) :2644-2654
[8]   Clinical assessment incorporating a personal genome [J].
Ashley, Euan A. ;
Butte, Atul J. ;
Wheeler, Matthew T. ;
Chen, Rong ;
Klein, Teri E. ;
Dewey, Frederick E. ;
Dudley, Joel T. ;
Ormond, Kelly E. ;
Pavlovic, Aleksandra ;
Morgan, Alexander A. ;
Pushkarev, Dmitry ;
Neff, Norma F. ;
Hudgins, Louanne ;
Gong, Li ;
Hodges, Laura M. ;
Berlin, Dorit S. ;
Thorn, Caroline F. ;
Sangkuhl, Katrin ;
Hebert, Joan M. ;
Woon, Mark ;
Sagreiya, Hersh ;
Whaley, Ryan ;
Knowles, Joshua W. ;
Chou, Michael F. ;
Thakuria, Joseph V. ;
Rosenbaum, Abraham M. ;
Zaranek, Alexander Wait ;
Church, George M. ;
Greely, Henry T. ;
Quake, Stephen R. ;
Altman, Russ B. .
LANCET, 2010, 375 (9725) :1525-1535
[9]   Network medicine: a network-based approach to human disease [J].
Barabasi, Albert-Laszlo ;
Gulbahce, Natali ;
Loscalzo, Joseph .
NATURE REVIEWS GENETICS, 2011, 12 (01) :56-68
[10]   MicroRNAs: Target Recognition and Regulatory Functions [J].
Bartel, David P. .
CELL, 2009, 136 (02) :215-233