Metadynamics as a tool for exploring free energy landscapes of chemical reactions

被引:313
作者
Ensing, B
De Vivo, M
Liu, ZW
Moore, P
Klein, ML
机构
[1] Univ Penn, Ctr Mol Modeling, Philadelphia, PA 19104 USA
[2] Univ Penn, Dept Chem, Philadelphia, PA 19104 USA
[3] Univ Sci Philadelphia, Dept Chem & Biochem, Philadelphia, PA 19104 USA
关键词
D O I
10.1021/ar040198i
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The metadynamics or hills method is a relatively new molecular dynamics technique aimed to enhance the sampling of separated regions in phase space and map out the underlying free energy landscape as a function of a small number of order parameters or collective variables. The high efficiency allows for the application of metadynamics in combination with first principles dynamics methods, in particular with Car-Parrinello molecular dynamics, to study processes in which changes in the electronic structure play a dominant role, such as chemical reactions. The option to choose several independent collective variables is important to tackle complex and concerted transformations that lack an obvious a priori choice for a single reaction coordinate. In this Account, we discuss the role of metadynamics in the search of transition states, local minima, reaction paths, free energy profiles, and reaction coordinates among a growing list of alternative methods.
引用
收藏
页码:73 / 81
页数:9
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