Model-based analysis of multishell diffusion MR data for tractography: How to get over fitting problems

被引:287
作者
Jbabdi, Saad [1 ]
Sotiropoulos, Stamatios N. [1 ]
Savio, Alexander M. [2 ]
Grana, Manuel [2 ]
Behrens, Timothy E. J. [1 ,3 ]
机构
[1] Univ Oxford, Oxford Ctr Funct Magnet Resonance Imaging Brain F, Oxford OX3 9DU, England
[2] Univ Pais Vasco UPV EHU, Grp Inteligencia Computac, Fac Informat San Sebastian, San Sebastian, Spain
[3] Wellcome Trust Ctr Neuroimaging, London, England
基金
英国惠康基金; 英国医学研究理事会;
关键词
multishell; diffusion MRI; tractography; FIBER ORIENTATION DISTRIBUTIONS; WATER DIFFUSION; SPHERICAL DECONVOLUTION; HUMAN BRAIN; SPIN-ECHO; AXON DIAMETER; DENSITY; RECONSTRUCTION; RESOLUTION; MOTION;
D O I
10.1002/mrm.24204
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
In this article, we highlight an issue that arises when using multiple b-values in a model-based analysis of diffusion MR data for tractography. The non-monoexponential decay, commonly observed in experimental data, is shown to induce overfitting in the distribution of fiber orientations when not considered in the model. Extra fiber orientations perpendicular to the main orientation arise to compensate for the slower apparent signal decay at higher b-values. We propose a simple extension to the ball and stick model based on a continuous gamma distribution of diffusivities, which significantly improves the fitting and reduces the overfitting. Using in vivo experimental data, we show that this model outperforms a simpler, noise floor model, especially at the interfaces between brain tissues, suggesting that partial volume effects are a major cause of the observed non-monoexponential decay. This model may be helpful for future data acquisition strategies that may attempt to combine multiple shells to improve estimates of fiber orientations in white matter and near the cortex. Magn Reson Med, 2012. (c) 2012 Wiley Periodicals, Inc.
引用
收藏
页码:1846 / 1855
页数:10
相关论文
共 47 条
[1]   Reconstruction of the Orientation Distribution Function in Single- and Multiple-Shell q-Ball Imaging Within Constant Solid Angle [J].
Aganj, Iman ;
Lenglet, Christophe ;
Sapiro, Guillermo ;
Yacoub, Essa ;
Ugurbil, Kamil ;
Harel, Noam .
MAGNETIC RESONANCE IN MEDICINE, 2010, 64 (02) :554-566
[2]   Orientationally invariant indices of axon diameter and density from diffusion MRI [J].
Alexander, Daniel C. ;
Hubbard, Penny L. ;
Hall, Matt G. ;
Moore, Elizabeth A. ;
Ptito, Maurice ;
Parker, Geoff J. M. ;
Dyrby, Tim B. .
NEUROIMAGE, 2010, 52 (04) :1374-1389
[3]   Measurement of fiber orientation distributions using high angular resolution diffusion imaging [J].
Anderson, AW .
MAGNETIC RESONANCE IN MEDICINE, 2005, 54 (05) :1194-1206
[4]  
Andersson J, 2007, TECHNICAL REPORT
[5]   AxCaliber: A method for measuring axon diameter distribution from diffusion MRI [J].
Assaf, Yaniv ;
Blumenfeld-Katzir, Tamar ;
Yovel, Yossi ;
Basser, Peter J. .
MAGNETIC RESONANCE IN MEDICINE, 2008, 59 (06) :1347-1354
[6]   DETERMINANTS OF ANISOTROPIC WATER DIFFUSION IN NERVES [J].
BEAULIEU, C ;
ALLEN, PS .
MAGNETIC RESONANCE IN MEDICINE, 1994, 31 (04) :394-400
[7]   Probabilistic diffusion tractography with multiple fibre orientations: What can we gain? [J].
Behrens, T. E. J. ;
Berg, H. Johansen ;
Jbabdi, S. ;
Rushworth, M. F. S. ;
Woolrich, M. W. .
NEUROIMAGE, 2007, 34 (01) :144-155
[8]   Characterization and propagation of uncertainty in diffusion-weighted MR imaging [J].
Behrens, TEJ ;
Woolrich, MW ;
Jenkinson, M ;
Johansen-Berg, H ;
Nunes, RG ;
Clare, S ;
Matthews, PM ;
Brady, JM ;
Smith, SM .
MAGNETIC RESONANCE IN MEDICINE, 2003, 50 (05) :1077-1088
[9]   Characterization of continuously distributed cortical water diffusion rates with a stretched-exponential model [J].
Bennett, KM ;
Schmainda, KM ;
Bennett, R ;
Rowe, DB ;
Lu, HB ;
Hyde, JS .
MAGNETIC RESONANCE IN MEDICINE, 2003, 50 (04) :727-734