Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

被引：898

作者：

Abad, Pierre ^{[1
,2
,3
]}

Gouzy, Jerome ^{[4
]}

Aury, Jean-Marc ^{[5
,6
,29
]}

Castagnone-Sereno, Philippe ^{[1
,2
,3
]}

Danchin, Etienne G. J. ^{[1
,2
,3
]}

Deleury, Emeline ^{[1
,2
,3
]}

Perfus-Barbeoch, Laetitia ^{[1
,2
,3
]}

Anthouard, Veronique ^{[5
,6
,29
]}

Artiguenave, Francois ^{[5
,29
]}

Blok, Vivian C. ^{[7
]}

Caillaud, Marie-Cecile ^{[1
,2
,3
]}

Coutinho, Pedro M. ^{[8
,9
,10
]}

Dasilva, Corinne ^{[5
,6
,29
]}

De Luca, Francesca ^{[11
]}

Deau, Florence ^{[1
,2
,3
]}

Esquibet, Magali ^{[12
]}

Flutre, Timothe ^{[13
]}

Goldstone, Jared V. ^{[14
]}

Hamamouch, Noureddine ^{[15
]}

Hewezi, Tarek ^{[16
]}

Jaillon, Olivier ^{[5
,6
,29
]}

Jubin, Claire ^{[5
,6
,29
]}

Leonetti, Paola ^{[11
]}

Magliano, Marc ^{[1
,2
]}

Maier, Tom R. ^{[16
]}

Markov, Gabriel V. ^{[17
,18
]}

McVeigh, Paul ^{[19
]}

Pesole, Graziano ^{[20
,21
]}

Poulain, Julie ^{[5
,6
,29
]}

Robinson-Rechavi, Marc ^{[22
,23
]}

Sallet, Erika ^{[24
,25
]}

Segurens, Beatrice ^{[5
,6
,29
]}

Steinbach, Delphine ^{[13
]}

Tytgat, Tom ^{[26
]}

Ugarte, Edgardo ^{[5
,6
,29
]}

van Ghelder, Cyril ^{[1
,2
,3
]}

Veronico, Pasqua ^{[11
]}

Baum, Thomas J. ^{[16
]}

Blaxter, Mark ^{[27
]}

Bleve-Zacheo, Teresa ^{[11
]}

Davis, Eric L. ^{[15
]}

Ewbank, Jonathan J. ^{[28
]}

Favery, Bruno ^{[1
,2
,3
]}

Grenier, Eric ^{[12
]}

Henrissat, Bernard ^{[8
,9
,10
]}

Jones, John T. ^{[7
]}

Laudet, Vincent ^{[17
]}

Maule, Aaron G. ^{[19
]}

Quesneville, Hadi ^{[13
]}

Rosso, Marie-Noelle ^{[1
,2
,3
]}

机构：

[1] INRA, UMR 1301, F-06903 Sophia Antipolis, France

[2] CNRS, UMR 6243, F-06903 Sophia Antipolis, France

[3] UNSA, UMR 1301, F-06903 Sophia Antipolis, France

[4] INRA, CNRS, Lab Interact Plantes Microorganismes, F-31320 Castanet Tolosan, France

[5] Genoscope CEA, F-91057 Evry, France

[6] Univ Evry, F-91057 Evry, France

[7] Scottish Crop Res Inst, Plant Pathol Programme, Dundee DD2 5DA, Scotland

[8] CNRS, UMR 6098, F-13288 Marseille, France

[9] Univ Aix Marseille 1, F-13288 Marseille, France

[10] Univ Aix Marseille 2, F-13288 Marseille, France

[11] CNR, Ist Protez Piante, I-70126 Bari, Italy

[12] Univ Rennes 1, INRA, UMR1099, BiO3P, F-35653 Le Rheu, France

[13] INRA, URGI, UR1164, F-91034 Evry, France

[14] Woods Hole Oceanog Inst, Dept Biol, Woods Hole, MA 02543 USA

[15] N Carolina State Univ, Dept Plant Pathol, Raleigh, NC 27607 USA

[16] Iowa State Univ, Dept Plant Pathol, Ames, IA 50011 USA

[17] Univ Lyon 1, Ecole Normale Super Lyon, Inst Genom Fonct Lyon, Mol Zool Team,CNRS,INRA,Inst Federatif Biosci Ger, F-69364 Lyon 07, France

[18] Museum Natl Hist Nat, USM Evolut Regulat Endoriniennes 501, F-75005 Paris, France

[19] Queens Univ Belfast, Sch Biol Sci, Ctr Med Biol, Belfast BT9 7BL, Antrim, North Ireland

[20] Univ Bari, Dipartmento Biochim & Biol Mol E Quagliariello, I-70126 Bari, Italy

[21] CNR, Ist Tecnol Biomed, I-70126 Bari, Italy

[22] Univ Lausanne, UNIL Sorge, Dept Ecol & Evolut, CH-1015 Lausanne, Switzerland

[23] Swiss Inst Bioinformat, CH-1015 Lausanne, Switzerland

[24] GIS Toulouse Genopole, Plateforme Bioinformat Genopole Toulouse Midi Pyr, F-31320 Castanet Tolosan, France

[25] INRA, Unite Biometrie & Intelligence Artificielle UR875, F-31320 Castanet Tolosan, France

[26] Wageningen Univ, Nematol Lab, NL-6709 PD Wageningen, Netherlands

[27] Univ Edinburgh, Inst Evolutionary Biol, Edinburgh EH9 3JT, Midlothian, Scotland

[28] Univ Mediterranee, INSERM, CNRS, Ctr Immunol Marseille Luminy, F-13288 Marseille 09, France

[29] CNRS, UMR 8030, F-91057 Evry, France

来源：

NATURE BIOTECHNOLOGY | 2008年 / 26卷 / 08期

关键词：

D O I：

10.1038/nbt.1482

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Plant-parasitic nematodes are major agricultural pests worldwide and novel approaches to control them are sorely needed. We report the draft genome sequence of the root-knot nematode Meloidogyne incognita, a biotrophic parasite of many crops, including tomato, cotton and coffee. Most of the assembled sequence of this asexually reproducing nematode, totaling 86 Mb, exists in pairs of homologous but divergent segments. This suggests that ancient allelic regions in M. incognita are evolving toward effective haploidy, permitting new mechanisms of adaptation. The number and diversity of plant cell wall-degrading enzymes in M. incognita is unprecedented in any animal for which a genome sequence is available, and may derive from multiple horizontal gene transfers from bacterial sources. Our results provide insights into the adaptations required by metazoans to successfully parasitize immunocompetent plants, and open the way for discovering new antiparasitic strategies.

引用

页码：909 / 915

页数：7

共 45 条

[1] Resistance to antimicrobial peptides contributes to persistence of Salmonella typhimurium in the C-elegans intestine [J].

Alegado, Rosanna A. ;

Tan, Man-Wah .

CELLULAR MICROBIOLOGY, 2008, 10 (06) :1259-1273

[2] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].

Altschul, SF ;

Madden, TL ;

Schaffer, AA ;

Zhang, JH ;

Zhang, Z ;

Miller, W ;

Lipman, DJ .

NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402

[3] Evolutionary genomics of nuclear receptors: From twenty-five ancestral genes to derived endocrine systems [J].

Bertrand, W ;

Brunet, FG ;

Escriva, H ;

Parmentier, G ;

Laudet, V ;

Robinson-Rechavi, M .

MOLECULAR BIOLOGY AND EVOLUTION, 2004, 21 (10) :1923-1937

[4] Bdelloid rotifers revisited [J].

Birky, CW .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (09) :2651-2652

[5] Nematoda: Genes, genomes and the evolution of parasitism [J].

Blaxter, ML .

ADVANCES IN PARASITOLOGY, VOL 54: THE EVOLUTION OF PARASITISM-A PHYLOGENETIC PERSPECTIVE, 2003, 54 :101-195

[6] Genome sequence of the nematode C-elegans:: A platform for investigating biology [J].

不详 .

SCIENCE, 1998, 282 (5396) :2012-2018

[7] MAP65-3 microtubule-associated protein is essential for nematode-induced giant cell ontogenesis in Arabidopsis [J].

Caillaud, Marie-Cecile ;

Lecomte, Philippe ;

Jammes, Fabien ;

Quentin, Michael ;

Pagnotta, Sophie ;

Andrio, Emilie ;

Engler, Janice de Almeida ;

Marfaing, Nicolas ;

Gounon, Pierre ;

Abad, Pierre ;

Favery, Bruno .

PLANT CELL, 2008, 20 (02) :423-437

[8] Root-knot nematodes manipulate plant cell functions during a compatible interaction [J].

Caillaud, Marie-Cercile ;

Dubreuil, Geraldine ;

Quentin, Michaeel ;

Perfus-Barbeoch, Laetitia ;

Lecornte, Philippe ;

Engler, Janice de Almeida ;

Abad, Pierre ;

Rosso, Marie-Noeelle ;

Favery, Bruno .

JOURNAL OF PLANT PHYSIOLOGY, 2008, 165 (01) :104-113

[9] Genetic variability and adaptive evolution in parthenogenetic root-knot nematodes [J].

Castagnone-Sereno, P .

HEREDITY, 2006, 96 (04) :282-289

[10] Getting to the roots of parasitism by nematodes [J].

Davis, EL ;

Hussey, RS ;

Baum, TJ .

TRENDS IN PARASITOLOGY, 2004, 20 (03) :134-141

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