Synergies of virtual screening approaches

被引:46
作者
Muegge, Ingo [1 ]
机构
[1] Boehringer Ingelheim Pharmaceut Inc, Ridgefield, CT 06877 USA
关键词
in silico screening; docking; scoring; compound similarity; pharmacophore;
D O I
10.2174/138955708785132792
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Virtual screening is a knowledge driven approach. Therefore, synergies between different virtual screening methods using information about the drug target as well as about known ligands in combination promise the best results. Finding novel active scaffolds is often a more important success criterion than hit rates of virtual screens. Novelty should also be considered in balance with often weaker activities of virtual screening hits. Virtual screening is most effective if performed in iterations following up on weak primary hits of interest through testing of structural analogs and additional synthesis of compounds.
引用
收藏
页码:927 / 933
页数:7
相关论文
共 47 条
[1]   Ligand based virtual screening and biological evaluation of inhibitors of chorismate mutase (Rv1885c) from Mycobacterium tuberculosis H37Rv [J].
Agrawal, Himanshu ;
Kumar, Ashutosh ;
Bal, Naresh Chandra ;
Siddiqi, Mohammad Imran ;
Arora, Ashish .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2007, 17 (11) :3053-3058
[2]   Focused library design in GPCR projects on the example of 5-HT2c agonists:: Comparison of structure-based virtual screening with ligand-based search methods [J].
Bissantz, C ;
Schalon, C ;
Guba, W ;
Stahl, M .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2005, 61 (04) :938-952
[3]   Virtual and biomolecular screening converge on a selective agonist for GPR30 [J].
Bologa, CG ;
Revankar, CM ;
Young, SM ;
Edwards, BS ;
Arterburn, JB ;
Kiselyov, AS ;
Parker, MA ;
Tkachenko, SE ;
Savchuck, NP ;
Sklar, LA ;
Oprea, TI ;
Prossnitz, ER .
NATURE CHEMICAL BIOLOGY, 2006, 2 (04) :207-212
[4]   Here Be dragons: Docking and screening in an uncharted region of chemical space [J].
Brenk, R ;
Irwin, JJ ;
Shoichet, BK .
JOURNAL OF BIOMOLECULAR SCREENING, 2005, 10 (07) :667-674
[5]   Consensus scoring: A method for obtaining improved hit rates from docking databases of three-dimensional structures into proteins [J].
Charifson, PS ;
Corkery, JJ ;
Murcko, MA ;
Walters, WP .
JOURNAL OF MEDICINAL CHEMISTRY, 1999, 42 (25) :5100-5109
[6]   Successful in silico discovery of novel nonsteroidal ligands for human sex hormone binding globulin [J].
Cherkasov, A ;
Shi, Z ;
Fallahi, M ;
Hammon, GL .
JOURNAL OF MEDICINAL CHEMISTRY, 2005, 48 (09) :3203-3213
[7]   A virtual screening approach to finding novel and potent antagonists at the melanin-concentrating hormone 1 receptor [J].
Clark, DE ;
Higgs, C ;
Wren, SP ;
Dyke, HJ ;
Wong, M ;
Norman, D ;
Lockey, PM ;
Roach, AG .
JOURNAL OF MEDICINAL CHEMISTRY, 2004, 47 (16) :3962-3971
[8]   Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches [J].
Eckert, Hanna ;
Bojorath, Juergen .
DRUG DISCOVERY TODAY, 2007, 12 (5-6) :225-233
[9]   Structure-based drug discovery using GPCR homology modeling: Successful virtual screening for antagonists of the Alpha1A adrenergic receptor [J].
Evers, A ;
Klabunde, T .
JOURNAL OF MEDICINAL CHEMISTRY, 2005, 48 (04) :1088-1097
[10]   Virtual screening of biogenic amine-binding G-protein coupled receptors: Comparative evaluation of protein- and ligand-based virtual screening protocols [J].
Evers, A ;
Hessler, G ;
Matter, H ;
Klabunde, T .
JOURNAL OF MEDICINAL CHEMISTRY, 2005, 48 (17) :5448-5465