Estimating the time scale of chemical exchange of proteins from measurements of transverse relaxation rates in solution

被引:100
作者
Ishima, R [1 ]
Torchia, DA [1 ]
机构
[1] Natl Inst Dent & Craniofacial Res, Struct Mol Biol Unit, NIH, Bethesda, MD 20892 USA
基金
美国国家卫生研究院;
关键词
chemical exchange; protein; relaxation;
D O I
10.1023/A:1008324025406
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Chemical (conformational) exchange on the ms-mu s time scale is reliably identified by the observation of transverse relaxation rates, R-ex, that depend upon the strength of the effective field (omega(1eff) = gamma B-1eff) used in spin lock or CPMG experiments. In order to determine if the exchange correlation time, tau(ex), is the fast or slow limit, measurements of (i) signal line shape and (ii) temperature dependence of R-ex have been commonly used in studies of stable, small molecules. However, these approaches are often not applicable to proteins, because sample stability and solubility, respectively, limit the temperature range and signal sensitivity of experiments. Herein we use a complex, but general, two-site exchange equation to show when the simple fast exchange equations for R-ex are good approximations, in the case of proteins. We then present a simple empirical equation that approximately predicts R-ex in all exchange regimes, and explains these results in a clear, straightforward manner. Finally we show how one can reliably determine whether tau(ex) is in the fast or slow exchange limit.
引用
收藏
页码:369 / 372
页数:4
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