共 27 条
Network-based approaches for linking metabolism with environment
被引:33
作者:

Janga, Sarath Chandra
论文数: 0 引用数: 0
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机构:
MRC, Mol Biol Lab, Cambridge CB2 0QH, England MRC, Mol Biol Lab, Cambridge CB2 0QH, England

Babu, M. Madan
论文数: 0 引用数: 0
h-index: 0
机构:
MRC, Mol Biol Lab, Cambridge CB2 0QH, England MRC, Mol Biol Lab, Cambridge CB2 0QH, England
机构:
[1] MRC, Mol Biol Lab, Cambridge CB2 0QH, England
基金:
英国医学研究理事会;
关键词:
D O I:
10.1186/gb-2008-9-11-239
中图分类号:
Q81 [生物工程学(生物技术)];
Q93 [微生物学];
学科分类号:
071005 ;
0836 ;
090102 ;
100705 ;
摘要:
Progress in the reconstruction of genome-wide metabolic maps has led to the development of network-based computational approaches for linking an organism with its biochemical habitat.
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