Research on the lakes of the McMurdo Dry Valleys, Antarctica, is typically conducted during the period of 24 h sunlight (October to January) when logistical support is readily available. As part of the International Polar Year initiative, we obtained logistical support to study microbial dynamics in the permanently ice-covered lakes of the Taylor Valley during the transition from 24 h of sunlight to the complete darkness of the polar night (mid-April). Our study focused on the perennially ice-covered lakes Fryxell (FRX), East Lobe Bonney (ELB), and West Lobe Bonney (WLB), all of which are chemically stratified and have food webs dominated by microorganisms. Depth-integrated bacterioplankton productivity (BP; leucine incorporation [Leu] and thymidine incorporation [TdR]) in the lakes ranged from 1.2 to 3.4 mg C m(-2) d(-1). Overall, summer was characterized by relatively high rates of BP and photoautotrophic primary productivity. Rapid decreases in photosynthetically active radiation marked a subsequent transition period, which was characterized by variable cell counts and decreasing Leu: TdR ratios (ratios >1 signify a physiological shift from growth to maintenance mode). Finally, cell counts decreased and Leu: TdR increased by as much as 280% during the fall, revealing a distinct change in the physiological state of the bacterioplankton as light-mediated primary productivity ceased. Our data reveal that the shift in physiological state may result from a switch from contemporary phytoplankton-excreted carbon to other sources of dissolved organic carbon, which can support the bacterioplankton populations through the winter.