MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis

被引：80

作者：

Chu, Vu T. ^{[1
]}

Gottardo, Raphael ^{[2
]}

Raftery, Adrian E. ^{[3
]}

Bumgarner, Roger E. ^{[1
]}

Yeung, Ka Yee ^{[1
]}

机构：

[1] Univ Washington, Dept Microbiol, Seattle, WA 98195 USA

[2] Univ British Columbia, Dept Stat, Vancouver, BC V6T 1Z2, Canada

[3] Univ Washington, Dept Stat, Seattle, WA 98195 USA

来源：

GENOME BIOLOGY | 2008年 / 9卷 / 07期

基金：

加拿大自然科学与工程研究理事会;

关键词：

D O I：

10.1186/gb-2008-9-7-r118

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

We present MeV+R, an integration of the JAVA MultiExperiment Viewer program with Bioconductor packages. This integration of MultiExperiment Viewer and R is easily extensible to other R packages and provides users with point and click access to traditionally command line driven tools written in R. We demonstrate the ability to use MultiExperiment Viewer as a graphical user interface for Bioconductor applications in microarray data analysis by incorporating three Bioconductor packages, RAMA, BRIDGE and iterativeBMA.

引用

页数：11

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