Domain decomposition for implicit solvation models

被引:78
作者
Cances, Eric [1 ]
Maday, Yvon [2 ,3 ,4 ]
Stamm, Benjamin [2 ,5 ]
机构
[1] Univ Paris Est, CERMICS, Project Team Micmac, INRIA Ecole Ponts, F-77455 Marne La Vallee 2, France
[2] Univ Paris 06, UMR LJLL 7598, F-75005 Paris, France
[3] Brown Univ, Inst Univ France, Providence, RI 02912 USA
[4] Brown Univ, Div Appl Math, Providence, RI 02912 USA
[5] CNRS, UMR LJLL 7598, F-75005 Paris, France
关键词
POLARIZABLE CONTINUUM MODEL; MOLECULES; ENERGIES; FIELD;
D O I
10.1063/1.4816767
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
This article is the first of a series of papers dealing with domain decomposition algorithms for implicit solvent models. We show that, in the framework of the COSMO model, with van der Waals molecular cavities and classical charge distributions, the electrostatic energy contribution to the solvation energy, usually computed by solving an integral equation on the whole surface of the molecular cavity, can be computed more efficiently by using an integral equation formulation of Schwarz's domain decomposition method for boundary value problems. In addition, the so-obtained potential energy surface is smooth, which is a critical property to perform geometry optimization and molecular dynamics simulations. The purpose of this first article is to detail the methodology, set up the theoretical foundations of the approach, and study the accuracies and convergence rates of the resulting algorithms. The full efficiency of the method and its applicability to large molecular systems of biological interest is demonstrated elsewhere. (C) 2013 AIP Publishing LLC.
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收藏
页数:14
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