Crystal structure of the Fic (Filamentation Induced by cAMP) family protein SO4266 (gi|24375750) from Shewanella oneidensis MR-1 at 1.6 Å resolution

被引：20

作者：

Das, Debanu ^{[1
,2
]}

Krishna, S. Sri ^{[1
,3
,4
]}

McMullan, Daniel ^{[1
]}

Miller, Mitchell D. ^{[1
,2
,5
]}

Xu, Qingping ^{[1
,2
]}

Abdubek, Polat ^{[1
,5
]}

Acosta, Claire ^{[1
,5
]}

Astakhova, Tamara ^{[1
,3
]}

Axelrod, Herbert L. ^{[1
,2
]}

Burra, Prasad ^{[1
,4
]}

Carlton, Dennis ^{[1
,6
]}

Chiu, Hsiu-Ju ^{[1
,2
]}

Clayton, Thomas ^{[1
,6
]}

Deller, Marc C. ^{[1
,6
]}

Duan, Lian ^{[1
,3
]}

Elias, Ylva ^{[1
,6
]}

Elsliger, Marc-Andre ^{[1
,6
]}

Ernst, Dustin ^{[1
,5
]}

Feuerhelm, Julie ^{[1
,5
]}

Grzechnik, Anna ^{[1
,6
]}

Grzechnik, Slawomir K. ^{[1
,3
]}

Hale, Joanna ^{[1
,5
]}

Han, Gye Won ^{[1
,6
]}

Jaroszewski, Lukasz ^{[1
,3
,4
]}

Jin, Kevin K. ^{[1
,2
]}

Klock, Heath E. ^{[1
,5
]}

Knuth, Mark W. ^{[1
,5
]}

Kozbial, Piotr ^{[1
,4
]}

Kumar, Abhinav ^{[1
,2
]}

Marciano, David ^{[1
,6
]}

Morse, Andrew T. ^{[1
,3
]}

Murphy, Kevin D. ^{[1
,6
]}

Nigoghossian, Edward ^{[1
,5
]}

Okach, Linda ^{[1
,5
]}

Oommachen, Silvya ^{[1
,2
]}

Paulsen, Jessica ^{[1
,5
]}

Reyes, Ron ^{[1
,2
]}

Rife, Christopher L. ^{[1
,2
]}

Sefcovic, Natasha ^{[1
,4
]}

Tien, Henry ^{[1
,6
]}

Trame, Christine B. ^{[1
,2
]}

Trout, Christina V. ^{[1
,6
]}

van den Bedem, Henry ^{[1
,2
]}

Weekes, Dana ^{[1
,4
]}

White, Aprilfawn ^{[1
,5
]}

Hodgson, Keith O. ^{[1
]}

Wooley, John ^{[1
,3
]}

Deacon, Ashley M. ^{[1
,2
]}

Godzik, Adam ^{[1
,3
,4
]}

Lesley, Scott A. ^{[1
,5
,6
]}

机构：

[1] Stanford Univ, Joint Ctr Struct Genom, Menlo Pk, CA USA

[2] Stanford Univ, SLAC Natl Accelerator Lab, Stanford Synchrotron Radiat Lightsource, Menlo Pk, CA USA

[3] Univ Calif San Diego, Ctr Res Biol Syst, La Jolla, CA 92093 USA

[4] Burnham Inst Med Res, La Jolla, CA USA

[5] Novartis Res Fdn, Genom Inst, Prot Sci Dept, San Diego, CA USA

[6] Scripps Res Inst, JCSG, Dept Mol Biol, La Jolla, CA 92037 USA

来源：

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS | 2009年 / 75卷 / 01期

关键词：

structural genomics; Pfam PF02661; Phd-Doc system; winged-helix; DNA binding domain; transcription factor; DIFFRACTION; VALIDATION; SEQUENCE; SYSTEM; GENES; DOC; DNA;

D O I：

10.1002/prot.22338

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

[No abstract available]

引用

页码：264 / 271

页数：8

共 35 条

[1] New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system [J].

Anantharaman, V ;

Aravind, L .

GENOME BIOLOGY, 2003, 4 (12)

[2] The many faces of the helix-turn-helix domain: Transcription regulation and beyond [J].

Aravind, L ;

Anantharaman, V ;

Balaji, S ;

Babu, MM ;

Iyer, LM .

FEMS MICROBIOLOGY REVIEWS, 2005, 29 (02) :231-262

[3] THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].

BAILEY, S .

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763

[4] The Secreted Protein Discovery Initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: A bioinformatics assessment [J].

Clark, HF ;

Gurney, AL ;

Abaya, E ;

Baker, K ;

Baldwin, D ;

Brush, J ;

Chen, J ;

Chow, B ;

Chui, C ;

Crowley, C ;

Currell, B ;

Deuel, B ;

Dowd, P ;

Eaton, D ;

Foster, J ;

Grimaldi, C ;

Gu, QM ;

Hass, PE ;

Heldens, S ;

Huang, A ;

Kim, HS ;

Klimowski, L ;

Jin, YS ;

Johnson, S ;

Lee, J ;

Lewis, L ;

Liao, DZ ;

Mark, M ;

Robbie, E ;

Sanchez, C ;

Schoenfeld, J ;

Seshagiri, S ;

Simmons, L ;

Singh, J ;

Smith, V ;

Stinson, J ;

Vagts, A ;

Vandlen, R ;

Watanabe, C ;

Wieand, D ;

Woods, K ;

Xie, MH ;

Yansura, D ;

Yi, S ;

Yu, GY ;

Yuan, J ;

Zhang, M ;

Zhang, ZM ;

Goddard, A ;

Wood, WI .

GENOME RESEARCH, 2003, 13 (10) :2265-2270

[5] An automated system to mount cryo-cooled protein crystals on a synchrotron beamline, using compact sample cassettes and a small-scale robot [J].

Cohen, AE ;

Ellis, PJ ;

Miller, MD ;

Deacon, AM ;

Phizackerley, RP .

JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2002, 35 :720-726

[6] MolProbity: structure validation and all-atom contact analysis for nucleic acids and their complexes [J].

Davis, IW ;

Murray, LW ;

Richardson, JS ;

Richardson, DC .

NUCLEIC ACIDS RESEARCH, 2004, 32 :W615-W619

[7]

DeLano WL., 2002, PYMOL MOL GRAPHICS S

[8] Coot:: model-building tools for molecular graphics [J].

Emsley, P ;

Cowtan, K .

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2126-2132

[9] DaliLite workbench for protein structure comparison [J].

Holm, L ;

Park, J .

BIOINFORMATICS, 2000, 16 (06) :566-567

[10] AUTOMATIC PROCESSING OF ROTATION DIFFRACTION DATA FROM CRYSTALS OF INITIALLY UNKNOWN SYMMETRY AND CELL CONSTANTS [J].

KABSCH, W .

JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1993, 26 :795-800

← 1 2 3 4 →