Genome of Drosophila suzukii, the Spotted Wing Drosophila

被引：101

作者：

Chiu, Joanna C. ^{[1
]}

Jiang, Xuanting ^{[2
]}

Zhao, Li ^{[3
]}

Hamm, Christopher A. ^{[3
]}

Cridland, Julie M. ^{[3
]}

Saelao, Perot ^{[3
]}

Hamby, Kelly A. ^{[1
]}

Lee, Ernest K. ^{[4
]}

Kwok, Rosanna S. ^{[1
]}

Zhang, Guojie ^{[2
]}

Zalom, Frank G. ^{[1
]}

Walton, Vaughn M. ^{[5
]}

Begun, David J. ^{[3
]}

机构：

[1] Univ Calif Davis, Dept Entomol & Nematol, Coll Agr & Environm Sci, Davis, CA 95616 USA

[2] BGI Shenzhen, China Natl Genebank, Shenzhen 518083, Peoples R China

[3] Univ Calif Davis, Dept Ecol & Evolut, Coll Biol Sci, Davis, CA 95616 USA

[4] Amer Museum Nat Hist, Sackler Inst Comparat Genom, New York, NY 10024 USA

[5] Oregon State Univ, Dept Hort, Corvallis, OR 97331 USA

来源：

G3-GENES GENOMES GENETICS | 2013年 / 3卷 / 12期

关键词：

Drosophila suzukii; genome evolution; SpottedWingFlyBase; ortholog; DIPTERA DROSOPHILIDAE; LINKED GENES; EVOLUTION; ALIGNMENT; SEQUENCE; IDENTIFICATION; IMPROVEMENTS; SELECTION; SYSTEM; INVASION;

D O I：

10.1534/g3.113.008185

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Drosophila suzukii Matsumura (spotted wing drosophila) has recently become a serious pest of a wide variety of fruit crops in the United States as well as in Europe, leading to substantial yearly crop losses. To enable basic and applied research of this important pest, we sequenced the D. suzukii genome to obtain a high-quality reference sequence. Here, we discuss the basic properties of the genome and transcriptome and describe patterns of genome evolution in D. suzukii and its close relatives. Our analyses and genome annotations are presented in a web portal, SpottedWingFlyBase, to facilitate public access.

引用

页码：2257 / 2271

页数：15

共 74 条

[1] The genome sequence of Drosophila melanogaster [J].

Adams, MD ;

Celniker, SE ;

Holt, RA ;

Evans, CA ;

Gocayne, JD ;

Amanatides, PG ;

Scherer, SE ;

Li, PW ;

Hoskins, RA ;

Galle, RF ;

George, RA ;

Lewis, SE ;

Richards, S ;

Ashburner, M ;

Henderson, SN ;

Sutton, GG ;

Wortman, JR ;

Yandell, MD ;

Zhang, Q ;

Chen, LX ;

Brandon, RC ;

Rogers, YHC ;

Blazej, RG ;

Champe, M ;

Pfeiffer, BD ;

Wan, KH ;

Doyle, C ;

Baxter, EG ;

Helt, G ;

Nelson, CR ;

Miklos, GLG ;

Abril, JF ;

Agbayani, A ;

An, HJ ;

Andrews-Pfannkoch, C ;

Baldwin, D ;

Ballew, RM ;

Basu, A ;

Baxendale, J ;

Bayraktaroglu, L ;

Beasley, EM ;

Beeson, KY ;

Benos, PV ;

Berman, BP ;

Bhandari, D ;

Bolshakov, S ;

Borkova, D ;

Botchan, MR ;

Bouck, J ;

Brokstein, P .

SCIENCE, 2000, 287 (5461) :2185-2195

[2] BASIC LOCAL ALIGNMENT SEARCH TOOL [J].

ALTSCHUL, SF ;

GISH, W ;

MILLER, W ;

MYERS, EW ;

LIPMAN, DJ .

JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410

[3]

[Anonymous], 2002, PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4

[4] Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila [J].

Bai, Yongsheng ;

Casola, Claudio ;

Feschotte, Cedric ;

Betran, Esther .

GENOME BIOLOGY, 2007, 8 (01)

[5] The cytochrome P450 (CYP) gene superfamily in Daphnia pulex [J].

Baldwin, William S. ;

Marko, Peter B. ;

Nelson, David R. .

BMC GENOMICS, 2009, 10

[6] Population genomics:: Whole-genome analysis of polymorphism and divergence in Drosophila simulans [J].

Begun, David J. ;

Holloway, Alisha K. ;

Stevens, Kristian ;

Hillier, LaDeana W. ;

Poh, Yu-Ping ;

Hahn, Matthew W. ;

Nista, Phillip M. ;

Jones, Corbin D. ;

Kern, Andrew D. ;

Dewey, Colin N. ;

Pachter, Lior ;

Myers, Eugene ;

Langley, Charles H. .

PLOS BIOLOGY, 2007, 5 (11) :2534-2559

[7] Retroposed new genes out of the X in Drosophila [J].

Betrán, E ;

Thornton, K ;

Long, M .

GENOME RESEARCH, 2002, 12 (12) :1854-1859

[8] Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes [J].

Bhutkar, Arjun ;

Schaeffer, Stephen W. ;

Russo, Susan M. ;

Xu, Mu ;

Smith, Temple E. ;

Gelbart, Wifflam M. .

GENETICS, 2008, 179 (03) :1657-1680

[9] Using GeneWise in the Drosophila annotation experiment [J].

Birney, E ;

Durbin, R .

GENOME RESEARCH, 2000, 10 (04) :547-548

[10]

Bolda M. P., 2010, AGR RESOUR EC UPDATE, V13, P5, DOI [DOI 10.1111/j.1439-0418.2010.01583.x, DOI 10.1016/J.JFF.2015.04.027]

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