Genome Sequence of Streptomyces sp Strain TOR3209, a Rhizosphere Microecology Regulator Isolated from Tomato Rhizosphere

被引:13
作者
Hu, Dong [1 ]
Li, Xiaozhi
Chang, Yueli [2 ]
He, Huan [1 ,3 ]
Zhang, Cuimian [1 ]
Jia, Nan [1 ]
Li, Hongtao [1 ]
Wang, Zhanwu [1 ]
机构
[1] Hebei Acad Agr & Forestry Sci, Inst Genet & Physiol, Plant Genet Engn Ctr Hebei Prov, Shijiazhuang, Peoples R China
[2] Hebei North Univ, Coll Lab Sci, Zhangjiakou, Peoples R China
[3] Shijiazhuang Pharmaceut Grp Co Ltd, Pharmaceut Res Inst, Shijiazhuang, Peoples R China
关键词
GENES;
D O I
10.1128/JB.06684-11
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Streptomyces sp. strain TOR3209, isolated from tomato rhizosphere, can regulate the rhizosphere microecology of a variety of crops. Strain TOR3209 could improve plant systemic resistance and promote plant growth. Here, the genome sequence of strain TOR3209 is reported, providing the molecular biological basis of the regulation mechanism of rhizosphere microecology.
引用
收藏
页码:1627 / 1627
页数:1
相关论文
共 9 条
[1]   Accurate whole human genome sequencing using reversible terminator chemistry [J].
Bentley, David R. ;
Balasubramanian, Shankar ;
Swerdlow, Harold P. ;
Smith, Geoffrey P. ;
Milton, John ;
Brown, Clive G. ;
Hall, Kevin P. ;
Evers, Dirk J. ;
Barnes, Colin L. ;
Bignell, Helen R. ;
Boutell, Jonathan M. ;
Bryant, Jason ;
Carter, Richard J. ;
Cheetham, R. Keira ;
Cox, Anthony J. ;
Ellis, Darren J. ;
Flatbush, Michael R. ;
Gormley, Niall A. ;
Humphray, Sean J. ;
Irving, Leslie J. ;
Karbelashvili, Mirian S. ;
Kirk, Scott M. ;
Li, Heng ;
Liu, Xiaohai ;
Maisinger, Klaus S. ;
Murray, Lisa J. ;
Obradovic, Bojan ;
Ost, Tobias ;
Parkinson, Michael L. ;
Pratt, Mark R. ;
Rasolonjatovo, Isabelle M. J. ;
Reed, Mark T. ;
Rigatti, Roberto ;
Rodighiero, Chiara ;
Ross, Mark T. ;
Sabot, Andrea ;
Sankar, Subramanian V. ;
Scally, Aylwyn ;
Schroth, Gary P. ;
Smith, Mark E. ;
Smith, Vincent P. ;
Spiridou, Anastassia ;
Torrance, Peta E. ;
Tzonev, Svilen S. ;
Vermaas, Eric H. ;
Walter, Klaudia ;
Wu, Xiaolin ;
Zhang, Lu ;
Alam, Mohammed D. ;
Anastasi, Carole .
NATURE, 2008, 456 (7218) :53-59
[2]   Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) [J].
Bentley, SD ;
Chater, KF ;
Cerdeño-Tárraga, AM ;
Challis, GL ;
Thomson, NR ;
James, KD ;
Harris, DE ;
Quail, MA ;
Kieser, H ;
Harper, D ;
Bateman, A ;
Brown, S ;
Chandra, G ;
Chen, CW ;
Collins, M ;
Cronin, A ;
Fraser, A ;
Goble, A ;
Hidalgo, J ;
Hornsby, T ;
Howarth, S ;
Huang, CH ;
Kieser, T ;
Larke, L ;
Murphy, L ;
Oliver, K ;
O'Neil, S ;
Rabbinowitsch, E ;
Rajandream, MA ;
Rutherford, K ;
Rutter, S ;
Seeger, K ;
Saunders, D ;
Sharp, S ;
Squares, R ;
Squares, S ;
Taylor, K ;
Warren, T ;
Wietzorrek, A ;
Woodward, J ;
Barrell, BG ;
Parkhill, J ;
Hopwood, DA .
NATURE, 2002, 417 (6885) :141-147
[3]   Identifying bacterial genes and endosymbiont DNA with Glimmer [J].
Delcher, Arthur L. ;
Bratke, Kirsten A. ;
Powers, Edwin C. ;
Salzberg, Steven L. .
BIOINFORMATICS, 2007, 23 (06) :673-679
[4]   Draft Genome Sequence of the Marine Streptomyces sp Strain PP-C42, Isolated from the Baltic Sea [J].
Fan, Longjiang ;
Liu, Yun ;
Li, Zefeng ;
Baumann, Heike I. ;
Kleinschmidt, Katrin ;
Ye, Wanzhi ;
Imhoff, Johannes F. ;
Kleine, Michael ;
Cai, Daguang .
JOURNAL OF BACTERIOLOGY, 2011, 193 (14) :3691-3692
[5]   RNAmmer:: consistent and rapid annotation of ribosomal RNA genes [J].
Lagesen, Karin ;
Hallin, Peter ;
Rodland, Einar Andreas ;
Stærfeldt, Hans-Henrik ;
Rognes, Torbjorn ;
Ussery, David W. .
NUCLEIC ACIDS RESEARCH, 2007, 35 (09) :3100-3108
[6]   De novo assembly of human genomes with massively parallel short read sequencing [J].
Li, Ruiqiang ;
Zhu, Hongmei ;
Ruan, Jue ;
Qian, Wubin ;
Fang, Xiaodong ;
Shi, Zhongbin ;
Li, Yingrui ;
Li, Shengting ;
Shan, Gao ;
Kristiansen, Karsten ;
Li, Songgang ;
Yang, Huanming ;
Wang, Jian ;
Wang, Jun .
GENOME RESEARCH, 2010, 20 (02) :265-272
[7]   Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350 [J].
Ohnishi, Yasuo ;
Ishikawa, Jun ;
Hara, Hirofumi ;
Suzuki, Hirokazu ;
Ikenoya, Miwa ;
Ikeda, Haruo ;
Yamashita, Atsushi ;
Hattori, Masahira ;
Horinouchi, Sueharu .
JOURNAL OF BACTERIOLOGY, 2008, 190 (11) :4050-4060
[8]   Genome sequence of an industrial microorganism Streptomyces avermitilis:: Deducing the ability of producing secondary metabolites [J].
Omura, S ;
Ikeda, H ;
Ishikawa, J ;
Hanamoto, A ;
Takahashi, C ;
Shinose, M ;
Takahashi, Y ;
Horikawa, H ;
Nakazawa, H ;
Osonoe, T ;
Kikuchi, H ;
Shiba, T ;
Sakaki, Y ;
Hattori, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (21) :12215-12220
[9]   The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs [J].
Schattner, P ;
Brooks, AN ;
Lowe, TM .
NUCLEIC ACIDS RESEARCH, 2005, 33 :W686-W689