Addressing Scientific Rigor in Data Analytics Using Semantic Workflows

被引:2
作者
Erickson, John S. [1 ]
Sheehan, John [1 ]
Bennett, Kristin P. [1 ]
McGuinness, Deborah L. [1 ]
机构
[1] Rensselaer Polytech Inst, Troy, NY 12180 USA
来源
Provenance and Annotation of Data and Processes, IPAW 2016 | 2016年 / 9672卷
关键词
Provenance; Ontologies; Scientific rigor; Reproducibility;
D O I
10.1007/978-3-319-40593-3_18
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
New NIH grants require establishing scientific rigor, i.e. applicants must provide evidence of strict application of the scientific method to ensure robust and unbiased experimental design, methodology, analysis, interpretation and reporting of results. Researchers must transparently report experimental details so others may reproduce and extend findings. Provenance can help accomplish these objectives; analytical workflows can be annotated with sufficient information for peers to understand methods and reproduce the intended results. We aim to produce enhancements to the ontology space including links between existing ontologies, terminology gap analysis and ontology terms to address gaps, and potentially a new ontology aimed at integrating the higher level data analysis planning concepts. We are developing a collection of techniques and tools to enable workflow recipes or plans to be more clearly and consistently shared, improve understanding of all analysis aspects and enable greater reuse and reproduction. We aim to show that semantic workflows can improve scientific rigor in data analysis and to demonstrate their impact in specific research domains.
引用
收藏
页码:187 / 190
页数:4
相关论文
共 9 条
[1]  
[Anonymous], USENIX WORKSH THEOR
[2]  
Bowers S., 2005, C MOD ER 2005 P 24 I
[3]  
DataONE Scientific Workflows, 2014, PROVONE PROV EXT DAT
[4]  
Davidson S.B., 2008, P ACM SIGMOD INT C M, P1345, DOI DOI 10.1145/1376616.1376772
[5]   Wings: Intelligent Workflow-Based Design of Computational Experiments [J].
Gil, Yolanda ;
Ratnakar, Varun ;
Kim, Jihie ;
Moody, Joshua ;
Deelman, Ewa ;
Antonio Gonzalez-Calero, Pedro ;
Groth, Paul .
IEEE INTELLIGENT SYSTEMS, 2011, 26 (01) :62-72
[6]  
Lim Chunhyeok, 2010, 2010 IEEE INT C SERV
[7]  
McPhillips T., 2015, International Journal of Digital Curation, V10, P298, DOI DOI 10.2218/IJDC.V10I1.370
[8]   noWorkflow: Capturing and Analyzing Provenance of Scripts [J].
Murta, Leonardo ;
Braganholo, Vanessa ;
Chirigati, Fernando ;
Koop, David ;
Freire, Juliana .
PROVENANCE AND ANNOTATION OF DATA AND PROCESSES (IPAW 2014), 2015, 8628 :71-83
[9]   Taverna: a tool for the composition and enactment of bioinformatics workflows [J].
Oinn, T ;
Addis, M ;
Ferris, J ;
Marvin, D ;
Senger, M ;
Greenwood, M ;
Carver, T ;
Glover, K ;
Pocock, MR ;
Wipat, A ;
Li, P .
BIOINFORMATICS, 2004, 20 (17) :3045-3054