A genetic model for neurodevelopmental disease

被引:35
作者
Coe, Bradley P. [1 ]
Girirajan, Santhosh [1 ]
Eichler, Evan E. [1 ,2 ]
机构
[1] Univ Washington, Sch Med, Dept Genome Sci, Seattle, WA 98195 USA
[2] Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USA
基金
加拿大健康研究院;
关键词
COPY-NUMBER VARIATION; IDIOPATHIC GENERALIZED EPILEPSY; DE-NOVO CNVS; STRUCTURAL VARIATION; MENTAL-RETARDATION; 15Q13.3; MICRODELETIONS; INTRAGENIC DELETIONS; BIPOLAR-DISORDER; READ DEPTH; VARIANTS;
D O I
10.1016/j.conb.2012.04.007
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
The genetic basis of neurodevelopmental and neuropsychiatric diseases has been advanced by the discovery of large and recurrent copy number variants significantly enriched in cases when compared to controls. The pattern of this variation strongly implies that rare variants contribute significantly to neurological disease; that different genes will be responsible for similar diseases in different families; and that the same 'primary' genetic lesions can result in a different disease outcome depending potentially on the genetic background. Next-generation sequencing technologies are beginning to broaden the spectrum of disease-causing variation and provide specificity by pinpointing both genes and pathways for future diagnostics and therapeutics.
引用
收藏
页码:829 / 836
页数:8
相关论文
共 67 条
[1]   APPLICATIONS OF NEXT-GENERATION SEQUENCING Genome structural variation discovery and genotyping [J].
Alkan, Can ;
Coe, Bradley P. ;
Eichler, Evan E. .
NATURE REVIEWS GENETICS, 2011, 12 (05) :363-375
[2]   A map of human genome variation from population-scale sequencing [J].
Altshuler, David ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Collins, Francis S. ;
De la Vega, Francisco M. ;
Donnelly, Peter ;
Egholm, Michael ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Knoppers, Bartha M. ;
Lander, Eric S. ;
Lehrach, Hans ;
Mardis, Elaine R. ;
McVean, Gil A. ;
Nickerson, DebbieA. ;
Peltonen, Leena ;
Schafer, Alan J. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Deiros, David ;
Metzker, Mike ;
Muzny, Donna ;
Reid, Jeff ;
Wheeler, David ;
Wang, Jun ;
Li, Jingxiang ;
Jian, Min ;
Li, Guoqing ;
Li, Ruiqiang ;
Liang, Huiqing ;
Tian, Geng ;
Wang, Bo ;
Wang, Jian ;
Wang, Wei ;
Yang, Huanming ;
Zhang, Xiuqing ;
Zheng, Huisong ;
Lander, Eric S. ;
Altshuler, David L. ;
Ambrogio, Lauren ;
Bloom, Toby ;
Cibulskis, Kristian ;
Fennell, Tim J. ;
Gabriel, Stacey B. .
NATURE, 2010, 467 (7319) :1061-1073
[3]   Mutations causing syndromic autism define an axis of synaptic pathophysiology [J].
Auerbach, Benjamin D. ;
Osterweil, Emily K. ;
Bear, Mark F. .
NATURE, 2011, 480 (7375) :63-U222
[4]   Recent segmental duplications in the human genome [J].
Bailey, JA ;
Gu, ZP ;
Clark, RA ;
Reinert, K ;
Samonte, RV ;
Schwartz, S ;
Adams, MD ;
Myers, EW ;
Li, PW ;
Eichler, EE .
SCIENCE, 2002, 297 (5583) :1003-1007
[5]   Intragenic Deletions of IL1RAPL1: Report of Two Cases and Review of the Literature [J].
Behnecke, Anne ;
Hinderhofer, Katrin ;
Bartsch, Oliver ;
Nuemann, Astrid ;
Ipach, Marie-Luise ;
Damatova, Natalja ;
Haaf, Thomas ;
Dufke, Andreas ;
Riess, Olaf ;
Moog, Ute .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2011, 155A (02) :372-379
[6]   Detection of Clinically Relevant Exonic Copy-Number Changes by Array CGH [J].
Boone, Philip M. ;
Bacino, Carlos A. ;
Shaw, Chad A. ;
Eng, Patricia A. ;
Hixson, Patricia M. ;
Pursley, Amber N. ;
Kang, Sung-Hae L. ;
Yang, Yaping ;
Wiszniewska, Joanna ;
Nowakowska, Beata A. ;
del Gaudio, Daniela ;
Xia, Zhilian ;
Simpson-Patel, Gayle ;
Immken, LaDonna L. ;
Gibson, James B. ;
Tsai, Anne C. -H. ;
Bowers, Jennifer A. ;
Reimschisel, Tyler E. ;
Schaaf, Christian P. ;
Potocki, Lorraine ;
Scaglia, Fernando ;
Gambin, Tomasz ;
Sykulski, Maciej ;
Bartnik, Magdalena ;
Derwinska, Katarzyna ;
Wisniowiecka-Kowalnik, Barbara ;
Lalani, Seema R. ;
Probst, Frank J. ;
Bi, Weimin ;
Beaudet, Arthur L. ;
Patel, Ankita ;
Lupski, James R. ;
Cheung, Sau Wai ;
Stankiewicz, Pawel .
HUMAN MUTATION, 2010, 31 (12) :1326-1342
[7]   CLOSE LINKAGE OF FRAGILE X MENTAL-RETARDATION SYNDROME TO HEMOPHILIA-B AND TRANSMISSION THROUGH A NORMAL-MALE [J].
CAMERINO, G ;
MATTEI, MG ;
MATTEI, JF ;
JAYE, M ;
MANDEL, JL .
NATURE, 1983, 306 (5944) :701-704
[8]   Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing [J].
Campbell, Peter J. ;
Stephens, Philip J. ;
Pleasance, Erin D. ;
O'Meara, Sarah ;
Li, Heng ;
Santarius, Thomas ;
Stebbings, Lucy A. ;
Leroy, Catherine ;
Edkins, Sarah ;
Hardy, Claire ;
Teague, Jon W. ;
Menzies, Andrew ;
Goodhead, Ian ;
Turner, Daniel J. ;
Clee, Christopher M. ;
Quail, Michael A. ;
Cox, Antony ;
Brown, Clive ;
Durbin, Richard ;
Hurles, Matthew E. ;
Edwards, Paul A. W. ;
Bignell, Graham R. ;
Stratton, Michael R. ;
Futreal, P. Andrew .
NATURE GENETICS, 2008, 40 (06) :722-729
[9]   Use of array CGH to detect exonic copy number variants throughout the genome in autism families detects a novel deletion in TMLHE [J].
Celestino-Soper, Patricia B. S. ;
Shaw, Chad A. ;
Sanders, Stephan J. ;
Li, Jian ;
Murtha, Michael T. ;
Ercan-Sencicek, A. Gulhan ;
Davis, Lea ;
Thomson, Susanne ;
Gambin, Tomasz ;
Chinault, A. Craig ;
Ou, Zhishuo ;
German, Jennifer R. ;
Milosavljevic, Aleksandar ;
Sutcliffe, James S. ;
Cook, Edwin H., Jr. ;
Stankiewicz, Pawel ;
State, Matthew W. ;
Beaudet, Arthur L. .
HUMAN MOLECULAR GENETICS, 2011, 20 (22) :4360-4370
[10]   A copy number variation morbidity map of developmental delay [J].
Cooper, Gregory M. ;
Coe, Bradley P. ;
Girirajan, Santhosh ;
Rosenfeld, Jill A. ;
Vu, Tiffany H. ;
Baker, Carl ;
Williams, Charles ;
Stalker, Heather ;
Hamid, Rizwan ;
Hannig, Vickie ;
Abdel-Hamid, Hoda ;
Bader, Patricia ;
McCracken, Elizabeth ;
Niyazov, Dmitriy ;
Leppig, Kathleen ;
Thiese, Heidi ;
Hummel, Marybeth ;
Alexander, Nora ;
Gorski, Jerome ;
Kussmann, Jennifer ;
Shashi, Vandana ;
Johnson, Krys ;
Rehder, Catherine ;
Ballif, Blake C. ;
Shaffer, Lisa G. ;
Eichler, Evan E. .
NATURE GENETICS, 2011, 43 (09) :838-U44