Direct fitting of structure and chemical shift to NMR spectra

被引:9
作者
Atkinson, RA [1 ]
Saudek, V [1 ]
机构
[1] MARION MERRELL DOW RES INST,HOECHST MAR ROUSSEL,F-67080 STRASBOURG,FRANCE
来源
JOURNAL OF THE CHEMICAL SOCIETY-FARADAY TRANSACTIONS | 1997年 / 93卷 / 18期
关键词
D O I
10.1039/a702834b
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The possibility of determining protein structure directly from NMR spectra is investigated. Optimisation of four variables per atom (delta, x, y, z) directly against the nuclear Overhauser effect (NOE) spectrum by simulated annealing is shown to succeed in finding sets of coordinates (i.e. structures) and chemical shifts that match the reference configuration. The procedure is shown to work on both a fully resolved spectrum and when two resonances are overlapping. It is proposed that a direct approach may ultimately replace current methods of structure determination (assignment followed by structure calculation).
引用
收藏
页码:3319 / 3323
页数:5
相关论文
共 42 条
[1]  
[Anonymous], 1989, NUCL OVERHAUSER EFFE, DOI DOI 10.1002/MRC.1260280819
[2]  
ATKINSON RA, 1996, DYNAMICS PROBLEM REC
[3]   2-DIMENSIONAL SPECTROSCOPY - APPLICATION TO NUCLEAR MAGNETIC-RESONANCE [J].
AUE, WP ;
BARTHOLDI, E ;
ERNST, RR .
JOURNAL OF CHEMICAL PHYSICS, 1976, 64 (05) :2229-2246
[4]   A SPECTRAL CORRELATION-FUNCTION FOR EFFICIENT SEQUENTIAL NMR ASSIGNMENTS OF UNIFORMLY N-15-LABELED PROTEINS [J].
BARTELS, C ;
WUTHRICH, K .
JOURNAL OF BIOMOLECULAR NMR, 1994, 4 (06) :775-785
[5]   SENSITIVITY-ENHANCED CORRELATION OF N-15 AND H-1 CHEMICAL-SHIFTS IN NATURAL-ABUNDANCE SAMPLES VIA MULTIPLE QUANTUM COHERENCE [J].
BAX, A ;
GRIFFEY, RH ;
HAWKINS, BL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1983, 105 (24) :7188-7190
[6]   NATURAL ABUNDANCE N-15 NMR BY ENHANCED HETERONUCLEAR SPECTROSCOPY [J].
BODENHAUSEN, G ;
RUBEN, DJ .
CHEMICAL PHYSICS LETTERS, 1980, 69 (01) :185-189
[7]   CALCULATION OF PROTEIN CONFORMATIONS BY PROTON PROTON DISTANCE CONSTRAINTS - A NEW EFFICIENT ALGORITHM [J].
BRAUN, W ;
GO, N .
JOURNAL OF MOLECULAR BIOLOGY, 1985, 186 (03) :611-626
[8]   3-DIMENSIONAL STRUCTURE OF PROTEINS DETERMINED BY MOLECULAR-DYNAMICS WITH INTERPROTON DISTANCE RESTRAINTS - APPLICATION TO CRAMBIN [J].
BRUNGER, AT ;
CLORE, GM ;
GRONENBORN, AM ;
KARPLUS, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1986, 83 (11) :3801-3805
[9]  
BRUNGER AT, 1992, XPLOR VERSION 3 0 US
[10]  
CASE DA, 1994, METHOD ENZYMOL, V239, P392