Parallel computing with graphics processing units for high-speed Monte Carlo simulation of photon migration

被引:288
作者
Alerstam, Erik [1 ]
Svensson, Tomas [1 ]
Andersson-Engels, Stefan [1 ]
机构
[1] Lund Univ, Dept Phys, S-22100 Lund, Sweden
基金
瑞典研究理事会;
关键词
biomedical optics; simulations; scattering; Monte Carlo;
D O I
10.1117/1.3041496
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
General-purpose computing on graphics processing units (GPGPU) is shown to dramatically increase the speed of Monte Carlo simulations of photon migration. In a standard simulation of time-resolved photon migration in a semi-infinite geometry, the proposed methodology executed on a low-cost graphics processing unit (GPU) is a factor 1000 faster than simulation performed on a single standard processor. In addition, we address important technical aspects of GPU-based simulations of photon migration. The technique is expected to become a standard method in Monte Carlo simulations of photon migration. (C) 2008 Society of Photo-Optical Instrumentation Engineers. [DOI: 10.1117/1.3041496]
引用
收藏
页数:3
相关论文
共 26 条
[1]   Improved accuracy in time-resolved diffuse reflectance spectroscopy [J].
Alerstam, Erik ;
Andersson-Engels, Stefan ;
Svensson, Tomas .
OPTICS EXPRESS, 2008, 16 (14) :10440-10454
[2]   White Monte Carlo for time-resolved photon migration [J].
Alerstam, Erik ;
Andersson-Engels, Stefan ;
Svensson, Tomas .
JOURNAL OF BIOMEDICAL OPTICS, 2008, 13 (04)
[3]   In vivo local determination of tissue optical properties:: applications to human brain [J].
Bevilacqua, F ;
Piguet, D ;
Marquet, P ;
Gross, JD ;
Tromberg, BJ ;
Depeursinge, C .
APPLIED OPTICS, 1999, 38 (22) :4939-4950
[4]   Rise of the Graphics Processor [J].
Blythe, David .
PROCEEDINGS OF THE IEEE, 2008, 96 (05) :761-778
[5]   Three dimensional Monte Carlo code for photon migration through complex heterogeneous media including the adult human head [J].
Boas, DA ;
Culver, JP ;
Stott, JJ ;
Dunn, AK .
OPTICS EXPRESS, 2002, 10 (03) :159-170
[6]   Multiple processor version of a Monte Carlo code for photon transport in turbid media [J].
Colasanti, A ;
Guida, G ;
Kisslinger, A ;
Liuzzi, R ;
Quarto, M ;
Riccio, P ;
Roberti, G ;
Villani, F .
COMPUTER PHYSICS COMMUNICATIONS, 2000, 132 (1-2) :84-93
[7]   Photon migration in Raman spectroscopy [J].
Everall, N ;
Hahn, T ;
Matousek, P ;
Parker, AW ;
Towrie, M .
APPLIED SPECTROSCOPY, 2004, 58 (05) :591-597
[8]   MONTE-CARLO MODELING OF LIGHT-PROPAGATION IN HIGHLY SCATTERING TISSUES .1. MODEL PREDICTIONS AND COMPARISON WITH DIFFUSION-THEORY [J].
FLOCK, ST ;
PATTERSON, MS ;
WILSON, BC ;
WYMAN, DR .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 1989, 36 (12) :1162-1168
[9]  
GOSSAGE K, 2006, Patent No. 20070282575
[10]   CONDENSED MONTE-CARLO SIMULATIONS FOR THE DESCRIPTION OF LIGHT TRANSPORT [J].
GRAAFF, R ;
KOELINK, MH ;
DEMUL, FFM ;
ZIJLSTRA, WG ;
DASSEL, ACM ;
AARNOUDSE, JG .
APPLIED OPTICS, 1993, 32 (04) :426-434