Characterizing challenging microcrystalline solids with solid-state NMR shift tensor and synchrotron X-ray powder diffraction data: Structural analysis of ambuic acid

被引:45
作者
Harper, JK
Grant, DM
Zhang, YG
Lee, PL
Von Dreele, R
机构
[1] Univ Utah, Dept Chem, Salt Lake City, UT 84112 USA
[2] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA
关键词
D O I
10.1021/ja055570j
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Synchrotron X-ray powder diffraction and solid-state C-13 NMR shift tensor data are combined to provide a unique path to structure in microcrystalline organic solids. Analysis is demonstrated on ambuic acid powder, a widely occurring natural product, to provide the complete crystal structure. The NMR data verify phase purity, specify one molecule per asymmetric unit, and provide an initial structural model including relative stereochemistry and molecular conformation. A refinement of X-ray data from the initial model establishes that ambuic acid crystallizes in the P2(1) space group with unit cell parameters a = 15.5047(7), b = 4.3904(2), and c = 14.1933(4) angstrom and beta = 110.3134(3)degrees. This combined analysis yields structural improvements at two dihedral angles over prior NMR predictions with differences of 103 degrees and 37 degrees found. Only minor differences of +/- 5.5 degrees, on average, are observed at all remaining dihedral angles. Predicted hydroxyl hydrogen-bonding orientations also fit NMR predictions within +/- 6.9 degrees. This refinement corrects chemical shift assignments at two carbons and reduces the NMR error by similar to 16%. This work demonstrates that the combination of long-range order information from synchrotron powder diffraction data together with the accurate shorter range structure given by solid-state NMR measurements is a powerful tool for studying challenging organic solids.
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收藏
页码:1547 / 1552
页数:6
相关论文
共 35 条
[1]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[2]   INDEXING OF POWDER DIFFRACTION PATTERNS FOR LOW-SYMMETRY LATTICES BY THE SUCCESSIVE DICHOTOMY METHOD [J].
BOULTIF, A ;
LOUER, D .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1991, 24 (pt 6) :987-993
[3]   Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy [J].
Castellani, F ;
van Rossum, B ;
Diehl, A ;
Schubert, M ;
Rehbein, K ;
Oschkinat, H .
NATURE, 2002, 420 (6911) :98-102
[4]  
CLEARFIELD A, 2002, T AM CRYSTALLOGRAPHI, V37
[5]   Routine determination of molecular crystal structures from powder diffraction data [J].
David, WIF ;
Shankland, K ;
Shankland, N .
CHEMICAL COMMUNICATIONS, 1998, (08) :931-932
[6]  
DAVID WIF, 2002, INT UNION CRYSTALLOG, V13
[7]   THE DEVELOPMENT AND USE OF QUANTUM-MECHANICAL MOLECULAR-MODELS .76. AM1 - A NEW GENERAL-PURPOSE QUANTUM-MECHANICAL MOLECULAR-MODEL [J].
DEWAR, MJS ;
ZOEBISCH, EG ;
HEALY, EF ;
STEWART, JJP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1985, 107 (13) :3902-3909
[8]  
FANG L, 1996, J AM CHEM SOC, V118, P10629
[9]  
Frisch M.J., 2004, Gaussian 03
[10]  
Revision C.02