Chemical reporters for biological discovery

被引:293
作者
Grammel, Markus [1 ]
Hang, Howard C. [1 ]
机构
[1] Rockefeller Univ, Lab Chem Biol & Microbial Pathogenesis, New York, NY 10021 USA
基金
美国国家卫生研究院;
关键词
NEWLY SYNTHESIZED PROTEINS; GLCNAC-MODIFIED PROTEINS; IN-VIVO; GENETIC-CODE; GLYCOSYLATION; DYNAMICS; ANALOG; DNA; METHYLTRANSFERASE; PALMITOYLATION;
D O I
10.1038/nchembio.1296
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
Functional tools are needed to understand complex biological systems. Here we review how chemical reporters in conjunction with bioorthogonal labeling methods can be used to image and retrieve nucleic acids, proteins, glycans, lipids and other metabolites in vitro, in cells as well as in whole organisms. By tagging these biomolecules, researchers can now monitor their dynamics in living systems and discover specific substrates of cellular pathways. These advances in chemical biology are thus providing important tools to characterize biological pathways and are poised to facilitate our understanding of human diseases.
引用
收藏
页码:475 / 484
页数:10
相关论文
共 101 条
[1]
A semisynthetic epitope for kinase substrates [J].
Allen, Jasmina J. ;
Li, Manqing ;
Brinkworth, Craig S. ;
Paulson, Jennifer L. ;
Wang, Dan ;
Hubner, Anette ;
Chou, Wen-Hai ;
Davis, Roger J. ;
Burlingame, Alma L. ;
Messing, Robert O. ;
Katayama, Carol D. ;
Hedrick, Stephen M. ;
Shokat, Kevan M. .
NATURE METHODS, 2007, 4 (06) :511-516
[2]
Metabolic click-labeling with a fucose analog reveals pectin delivery, architecture, and dynamics in Arabidopsis cell walls [J].
Anderson, Charles T. ;
Wallace, Ian S. ;
Somerville, Chris R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (04) :1329-1334
[3]
Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans [J].
Arnesen, Thomas ;
Van Damme, Petra ;
Polevoda, Bogdan ;
Helsens, Kenny ;
Evjenth, Rune ;
Colaert, Niklaas ;
Varhaug, Jan Erik ;
Vandekerckhove, Joel ;
Lillehaug, Johan R. ;
Sherman, Fred ;
Gevaert, Kris .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (20) :8157-8162
[4]
A database of bacterial lipoproteins (DOLOP) with functional assignments to predicted lipoproteins [J].
Babu, MM ;
Priya, ML ;
Selvan, AT ;
Madera, M ;
Gough, J ;
Aravind, L ;
Sankaran, K .
JOURNAL OF BACTERIOLOGY, 2006, 188 (08) :2761-2773
[5]
A Chemical Probe for Lysine Malonylation [J].
Bao, Xiucong ;
Zhao, Qian ;
Yang, Tangpo ;
Fung, Yi Man Eva ;
Li, Xiang David .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2013, 52 (18) :4883-4886
[6]
Bianco A, 2012, NAT CHEM BIOL, V8, P748, DOI [10.1038/NCHEMBIO.1043, 10.1038/nchembio.1043]
[7]
Tetrazine ligation: Fast bioconjugation based on inverse-electron-demand Diels-Alder reactivity [J].
Blackman, Melissa L. ;
Royzen, Maksim ;
Fox, Joseph M. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (41) :13518-+
[8]
Covalent capture of kinase-specific phosphopeptides reveals Cdk1-cyclin B substrates [J].
Blethrow, Justin D. ;
Glavy, Joseph S. ;
Morgan, David O. ;
Shokat, Kevan M. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (05) :1442-1447
[9]
Se-Adenosyl-L-selenomethionine Cofactor Analogue as a Reporter of Protein Methylation [J].
Bothwell, Ian R. ;
Islam, Kabirul ;
Chen, Yuling ;
Zheng, Weihong ;
Blum, Gil ;
Deng, Haiteng ;
Luo, Minkui .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (36) :14905-14912
[10]
Proteolytic elimination of N-myristoyl modifications by the Shigella virulence factor IpaJ [J].
Burnaevskiy, Nikolay ;
Fox, Thomas G. ;
Plymire, Daniel A. ;
Ertelt, James M. ;
Weigele, Bethany A. ;
Selyunin, Andrey S. ;
Way, Sing Sing ;
Patrie, Steven M. ;
Alto, Neal M. .
NATURE, 2013, 496 (7443) :106-+