Use of allele specificity of comigrating AFLP markers to align genetic maps from different potato genotypes

被引:164
作者
vanderVoort, JNAMR [1 ]
vanZandvoort, P [1 ]
vanEck, HJ [1 ]
Folkertsma, RT [1 ]
Hutten, RCB [1 ]
Draaistra, J [1 ]
Gommers, FJ [1 ]
Jacobsen, E [1 ]
Helder, J [1 ]
Bakker, J [1 ]
机构
[1] AGR UNIV WAGENINGEN,GRAD SCH EXPTL PLANT SCI,DEPT PLANT BREEDING,NL-6700 AJ WAGENINGEN,NETHERLANDS
来源
MOLECULAR & GENERAL GENETICS | 1997年 / 255卷 / 04期
关键词
comparative mapping; DNA markers; Solanum tuberosum;
D O I
10.1007/s004380050516
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The allele specificity of AFLP markers was assessed in five relatively unrelated potato genotypes. To this end two diploid mapping populations of potato, F1SH x RH and F(1)AM x RH, were analysed using four and six AFLP primer combinations, respectively, recently applied to the analysis of the genetically well characterized backcross population BC_CxE. The AFLP profiles of the five parents revealed 733 AFLP markers and, when identical primer combinations were used, 131 comigrating AFLP markers were identified. After construction of five parental maps, the genomic positions of these comigrating AFLP markers were compared and 117 markers (89%) which targeted the same genomic region were assumed to be homologous. Of these putative homologues, 20 markers, each cloned from at least two genotypes, were sequenced and 19 sets of amplification products were shown to be nearly identical. The number of AFLP markers previously mapped in population BC_C x E ranged from three to eleven per chromosome, which allowed a reliable assessment of chromosome numbers from individual linkage groups obtained in populations F1SH x RH and F(1)AM x RH. The high incidence of corresponding AFLP alleles was confirmed by using an additional set of five primer combinations. The 733 AFLP markers localized provide a valuable reference collection for future mapping studies in potato. As a consequence AFLP analysis may replace more laborious locus-specific marker techniques.
引用
收藏
页码:438 / 447
页数:10
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