Role of the jelly-roll fold in substrate binding by 2-oxoglutarate oxygenases

被引:195
作者
Aik, WeiShen [1 ]
McDonough, Michael A. [1 ]
Thalhammer, Armin [1 ]
Chowdhury, Rasheduzzaman [1 ]
Schofield, Christopher J. [1 ]
机构
[1] Chem Res Lab, Oxford OX1 3TA, England
基金
英国惠康基金; 英国生物技术与生命科学研究理事会; 欧洲研究理事会;
关键词
HYPOXIA-INDUCIBLE FACTOR; TAURINE/ALPHA-KETOGLUTARATE DIOXYGENASE; DEACETOXYCEPHALOSPORIN-C-SYNTHASE; ISOPENICILLIN N-SYNTHASE; DNA-REPAIR DIOXYGENASE; CRYSTAL-STRUCTURE; STRUCTURAL BASIS; HISTONE DEMETHYLASES; ENZYMES; IRON;
D O I
10.1016/j.sbi.2012.10.001
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
2-Oxoglutarate (2OG) and ferrous iron dependent oxygenases catalyze two-electron oxidations of a range of small and large molecule substrates, including proteins/peptides/amino acids, nucleic acids/bases, and lipids, as well as natural products including antibiotics and signaling molecules. 2OG oxygenases employ variations of a core double-stranded beta-helix (DSBH; a.k.a. jelly-roll, cupin or jumonji C (JmjC)) fold to enable binding of Fe(II) and 2OG in a subfamily conserved manner. The topology of the DSBH limits regions directly involved in substrate binding: commonly the first, second and eighth strands, loops between the second/third and fourth/fifth DSBH strands, and the N-terminal and C-terminal regions are involved in primary substrate, co-substrate and cofactor binding. Insights into substrate recognition by 2OG oxygenases will help to enable selective inhibition and bioengineering studies.
引用
收藏
页码:691 / 700
页数:10
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