The peripheral blood transcriptome dynamically reflects system wide biology: a potential diagnostic tool

被引:539
作者
Liew, CC
Ma, J
Tang, HC
Zheng, R
Dempsey, AA
机构
[1] ChondroGene Inc, Toronto, ON, Canada
[2] Harvard Univ, Brigham & Womens Hosp, Sch Med, Boston, MA 02115 USA
来源
JOURNAL OF LABORATORY AND CLINICAL MEDICINE | 2006年 / 147卷 / 03期
关键词
D O I
10.1016/j.lab.2005.10.005
中图分类号
R446 [实验室诊断]; R-33 [实验医学、医学实验];
学科分类号
1001 ;
摘要
In our genome-wide survey of gene expression in human peripheral blood cells using both an expressed sequence tag (EST) and a microarray hybridization approach, we identified the expression of a large proportion (approximately 80%) of the genes encoded in the human genome. Comparison of the peripheral blood transcriptome with genes expressed in nine different human tissue types revealed that expression of over 80% was shared with any given tissue. We also sought to determine whether those gene transcripts undetected by these methods were also expressed in peripheral blood cells. Using reverse-transcriptase-polymerase chain reaction, we detected additional tissue-specific gene transcripts including betamyosin heavy chain (heart specific) and insulin (specific to pancreatic islet beta cells), in circulating blood cells. Arguably, the detection of low levels of tissue-specific transcripts could be considered products of "illegitimate" transcription; however, our study also demonstrates that environmental conditions affect the transcriptional regulation of insulin in the peripheral blood. We thus hypothesize that blood cells can act as sentinels of disease and that we could capitalize on this property of blood for the diagnosis/prognosis of disease (the "Sentinel Principle"). Peripheral blood is an ideal surrogate tissue as it is readily obtainable, provides a large biosensor pool in the form of gene transcripts, and response to changes in the macro- and micro-environments is detectable as alterations in the levels of these gene transcripts.
引用
收藏
页码:126 / 132
页数:7
相关论文
共 29 条
[1]   Gene expression in juvenile arthritis and spondyloarthropathy:: pro-angiogenic ELR+ chemokine genes relate to course of arthritis [J].
Barnes, MG ;
Aronow, BJ ;
Luyrink, LK ;
Moroldo, MB ;
Pavlidis, P ;
Passo, MH ;
Grom, AA ;
Hirsch, R ;
Giannini, EH ;
Colbert, RA ;
Glass, DN ;
Thompson, SD .
RHEUMATOLOGY, 2004, 43 (08) :973-979
[2]   Interferon and granulopoiesis signatures in systemic lupus erythematosus blood [J].
Bennett, L ;
Palucka, AK ;
Arce, E ;
Cantrell, V ;
Borvak, J ;
Banchereau, J ;
Pascual, V .
JOURNAL OF EXPERIMENTAL MEDICINE, 2003, 197 (06) :711-723
[3]   Gene microarray analysis of peripheral blood cells in pulmonary arterial hypertension [J].
Bull, TM ;
Coldren, CD ;
Moore, M ;
Sotto-Santiago, SM ;
Pham, DV ;
Nana-Sinkam, SP ;
Voelkel, NF ;
Geraci, MW .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2004, 170 (08) :911-919
[4]   TRANSCRIPTION OF THE DYSTROPHIN GENE IN HUMAN-MUSCLE AND NON-MUSCLE TISSUES [J].
CHELLY, J ;
KAPLAN, JC ;
MAIRE, P ;
GAUTRON, S ;
KAHN, A .
NATURE, 1988, 333 (6176) :858-860
[5]   ILLEGITIMATE TRANSCRIPTION - TRANSCRIPTION OF ANY GENE IN ANY CELL TYPE [J].
CHELLY, J ;
CONCORDET, JP ;
KAPLAN, JC ;
KAHN, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1989, 86 (08) :2617-2621
[6]   Broadly altered gene expression in blood leukocytes in essential hypertension is absent during treatment [J].
Chon, H ;
Gaillard, CAJM ;
van der Meijden, BB ;
Dijstelbloem, HM ;
Kraaijenhagen, RJ ;
van Leenen, D ;
Holstege, FCP ;
Joles, JA ;
Bluyssen, HAR ;
Koomans, HA ;
Braam, B .
HYPERTENSION, 2004, 43 (05) :947-951
[7]   Finishing the euchromatic sequence of the human genome [J].
Collins, FS ;
Lander, ES ;
Rogers, J ;
Waterston, RH .
NATURE, 2004, 431 (7011) :931-945
[8]   Effects of exercise on gene expression in human peripheral blood mononuclear cells [J].
Connolly, PH ;
Caiozzo, VJ ;
Zaldivar, F ;
Nemet, D ;
Larson, J ;
Hung, SP ;
Heck, JD ;
Hatfield, GW ;
Cooper, DM .
JOURNAL OF APPLIED PHYSIOLOGY, 2004, 97 (04) :1461-1469
[9]   Comparison of gene expression profiling between malignant and normal plasma cells with oligonucleotide arrays [J].
De Vos, J ;
Thykjær, T ;
Tarte, K ;
Ensslen, M ;
Raynaud, P ;
Requirand, G ;
Pellet, F ;
Pantesco, V ;
Rème, T ;
Jourdan, M ;
Rossi, JF ;
Orntoft, T ;
Klein, B .
ONCOGENE, 2002, 21 (44) :6848-6857
[10]   Expression profiling of blood samples from an SU5416 Phase III metastatic colorectal cancer clinical trial: a novel strategy for biomarker identification [J].
DePrimo, SE ;
Wong, LM ;
Khatry, DB ;
Nicholas, SL ;
Manning, WC ;
Smolich, BD ;
O'Farrell, AM ;
Cherrington, JM .
BMC CANCER, 2003, 3 (1)