Application of array comparative genomic hybridization in 256 patients with developmental delay or intellectual disability

被引:35
作者
Bartnik, Magdalena [1 ]
Nowakowska, Beata [1 ]
Derwinska, Katarzyna [1 ]
Wisniowiecka-Kowalnik, Barbara [1 ]
Kedzior, Marta [1 ]
Bernaciak, Joanna [1 ]
Ziemkiewicz, Kamila [1 ]
Gambin, Tomasz [2 ]
Sykulski, Maciej [3 ]
Bezniakow, Natalia [1 ]
Korniszewski, Lech [4 ]
Kutkowska-Kazmierczak, Anna [1 ]
Klapecki, Jakub [1 ]
Szczaluba, Krzysztof [1 ]
Shaw, Chad A. [5 ]
Mazurczak, Tadeusz [1 ]
Gambin, Anna [6 ]
Obersztyn, Ewa [1 ]
Bocian, Ewa [1 ]
Stankiewicz, Pawel [1 ,5 ]
机构
[1] Inst Mother & Child Hlth, Dept Med Genet, Warsaw, Poland
[2] Warsaw Univ Technol, Inst Comp Sci, Warsaw, Poland
[3] Univ Warsaw, Inst Informat, Warsaw, Poland
[4] World Hearing Ctr, Inst Physiol & Pathol Hearing, Genet Counseling Unit, Warsaw, Poland
[5] Baylor Coll Med, Dept Mol & Human Genet, Houston, TX 77030 USA
[6] Polish Acad Sci, Mossakowski Med Res Ctr, Warsaw, Poland
关键词
Copy-number variation; Microdeletion; Microduplication; Chromosomal microarray analysis; COPY-NUMBER VARIANTS; IDIOPATHIC MENTAL-RETARDATION; MICRODELETION SYNDROME; INTERSTITIAL DELETION; MOLECULAR CHARACTERIZATION; CONGENITAL-ANOMALIES; ALZHEIMERS-DISEASE; DISORDERS; MICROARRAY; PHENOTYPE;
D O I
10.1007/s13353-013-0181-x
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
We used whole-genome exon-targeted oligonucleotide array comparative genomic hybridization (array CGH) in a cohort of 256 patients with developmental delay (DD)/intellectual disability (ID) with or without dysmorphic features, additional neurodevelopmental abnormalities, and/or congenital malformations. In 69 patients, we identified 84 non-polymorphic copy-number variants, among which 41 are known to be clinically relevant, including two recently described deletions, 4q21.21q21.22 and 17q24.2. Chromosomal microarray analysis revealed also 15 potentially pathogenic changes, including three rare deletions, 5q35.3, 10q21.3, and 13q12.11. Additionally, we found 28 copy-number variants of unknown clinical significance. Our results further support the notion that copy-number variants significantly contribute to the genetic etiology of DD/ID and emphasize the efficacy of the detection of novel candidate genes for neurodevelopmental disorders by whole-genome array CGH.
引用
收藏
页码:125 / 144
页数:20
相关论文
共 60 条
[1]  
[Anonymous], 2006, INTELLECTUAL DISABIL
[2]   Discovery of a previously unrecognized microdeletion syndrome of 16p11.2-p12.2 [J].
Ballif, Blake C. ;
Hornor, Sara A. ;
Jenkins, Elizabeth ;
Madan-Khetarpal, Suneeta ;
Surti, Urvashi ;
Jackson, Kelly E. ;
Asamoah, Alexander ;
Brock, Pamela L. ;
Gowans, Gordon C. ;
Conway, Robert L. ;
Graham, John M., Jr. ;
Medne, Livija ;
Zackai, Elaine H. ;
Shaikh, Tamim H. ;
Geoghegan, Joel ;
Selzer, Rebecca R. ;
Eis, Peggy S. ;
Bejjani, Bassem A. ;
Shaffer, Lisa G. .
NATURE GENETICS, 2007, 39 (09) :1071-1073
[3]  
Battaglia A, 2013, EUR J PAEDI IN PRESS
[4]   Microdeletion at chromosome 4q21 defines a new emerging syndrome with marked growth restriction, mental retardation and absent or severely delayed speech [J].
Bonnet, C. ;
Andrieux, J. ;
Beri-Dexheimer, M. ;
Leheup B, B. ;
Boute, O. ;
Manouvrier, S. ;
Delobel, B. ;
Copin, H. ;
Receveur, A. ;
Mathieu, M. ;
Thiriez, G. ;
Le Caignec, C. ;
David, A. ;
de Blois, M. C. ;
Malan, V. ;
Philippe, A. ;
Cormier-Daire, V. ;
Colleaux, L. ;
Flori, E. ;
Dollfus, H. ;
Pelletier, V. ;
Thauvin-Robinet, C. ;
Masurel-Paulet, A. ;
Faivre, L. ;
Tardieu, M. ;
Bahi-Buisson, N. ;
Callier, P. ;
Mugneret, F. ;
Edery, P. ;
Jonveaux, P. ;
Sanlaville, D. .
JOURNAL OF MEDICAL GENETICS, 2010, 47 (06) :377-384
[5]   Detection of Clinically Relevant Exonic Copy-Number Changes by Array CGH [J].
Boone, Philip M. ;
Bacino, Carlos A. ;
Shaw, Chad A. ;
Eng, Patricia A. ;
Hixson, Patricia M. ;
Pursley, Amber N. ;
Kang, Sung-Hae L. ;
Yang, Yaping ;
Wiszniewska, Joanna ;
Nowakowska, Beata A. ;
del Gaudio, Daniela ;
Xia, Zhilian ;
Simpson-Patel, Gayle ;
Immken, LaDonna L. ;
Gibson, James B. ;
Tsai, Anne C. -H. ;
Bowers, Jennifer A. ;
Reimschisel, Tyler E. ;
Schaaf, Christian P. ;
Potocki, Lorraine ;
Scaglia, Fernando ;
Gambin, Tomasz ;
Sykulski, Maciej ;
Bartnik, Magdalena ;
Derwinska, Katarzyna ;
Wisniowiecka-Kowalnik, Barbara ;
Lalani, Seema R. ;
Probst, Frank J. ;
Bi, Weimin ;
Beaudet, Arthur L. ;
Patel, Ankita ;
Lupski, James R. ;
Cheung, Sau Wai ;
Stankiewicz, Pawel .
HUMAN MUTATION, 2010, 31 (12) :1326-1342
[6]   Hotspots of Large Rare Deletions in the Human Genome [J].
Bradley, W. Edward C. ;
Raelson, John V. ;
Dubois, Daniel Y. ;
Godin, Eric ;
Fournier, Helene ;
Prive, Charles ;
Allard, Rene ;
Pinchuk, Vadym ;
Lapalme, Micheline ;
Paulussen, Rene J. A. ;
Belouchi, Abdelmajid .
PLOS ONE, 2010, 5 (02)
[7]   Microdeletion/microduplication of proximal 15q11.2 between BP1 and BP2: a susceptibility region for neurological dysfunction including developmental and language delay [J].
Burnside, Rachel D. ;
Pasion, Romela ;
Mikhail, Fady M. ;
Carroll, Andrew J. ;
Robin, Nathaniel H. ;
Youngs, Erin L. ;
Gadi, Inder K. ;
Keitges, Elizabeth ;
Jaswaney, Vikram L. ;
Papenhausen, Peter R. ;
Potluri, Venkateswara R. ;
Risheg, Hiba ;
Rush, Brooke ;
Smith, Janice L. ;
Schwartz, Stuart ;
Tepperberg, James H. ;
Butler, Merlin G. .
HUMAN GENETICS, 2011, 130 (04) :517-528
[8]   Microarray-based CGH detects chromosomal mosaicism not revealed by conventional cytogenetics [J].
Cheung, Sau W. ;
Shaw, Chad A. ;
Scott, Daryl A. ;
Patel, Ankita ;
Sahoo, Trilochan ;
Bacino, Carlos A. ;
Pursley, Amber ;
Li, Jiangzhen ;
Erickson, Robert ;
Gropman, Andrea L. ;
Miller, David T. ;
Seashore, Margretta R. ;
Summers, Anne M. ;
Stankiewicz, Pawel ;
Chinault, A. Craig ;
Lupski, James R. ;
Beaudet, Arthur L. ;
Sutton, V. Reid .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2007, 143A (15) :1679-1686
[9]   A copy number variation morbidity map of developmental delay [J].
Cooper, Gregory M. ;
Coe, Bradley P. ;
Girirajan, Santhosh ;
Rosenfeld, Jill A. ;
Vu, Tiffany H. ;
Baker, Carl ;
Williams, Charles ;
Stalker, Heather ;
Hamid, Rizwan ;
Hannig, Vickie ;
Abdel-Hamid, Hoda ;
Bader, Patricia ;
McCracken, Elizabeth ;
Niyazov, Dmitriy ;
Leppig, Kathleen ;
Thiese, Heidi ;
Hummel, Marybeth ;
Alexander, Nora ;
Gorski, Jerome ;
Kussmann, Jennifer ;
Shashi, Vandana ;
Johnson, Krys ;
Rehder, Catherine ;
Ballif, Blake C. ;
Shaffer, Lisa G. ;
Eichler, Evan E. .
NATURE GENETICS, 2011, 43 (09) :838-U44
[10]   Better prognosis for patients with del(7q) than for patients with monosomy 7 in myelodysplastic syndrome [J].
Cordoba, Iris ;
Gonzalez-Porras, Jose R. ;
Nomdedeu, Benet ;
Luno, Elisa ;
de Paz, Raquel ;
Such, Esperanza ;
Tormo, Mar ;
Vallespi, Teresa ;
Collado, Rosa ;
Xicoy, Blanca ;
Andreu, Rafael ;
Munoz, Juan A. ;
Sole, Francesc ;
Cervera, Jose ;
del Canizo, Consuelo .
CANCER, 2012, 118 (01) :127-133