Optimization of immunofluorescence methods by quantitative image analysis

There is a growing trend towards the objective quantification of immunohistochemical staining, However, quantification has not been used previously to optimize the original published immunohistochemical methods. We present a quantitative method for analyzing immunofluorescence staining employing the Applied Imaging MAGISCAN image analysis system, which has then been used to optimize major aspects of the standard immunofluorescent staining protocols, The optimization process resulted in a method that increased specific staining up to fivefold over typical published protocols, with no increase in nonspecific staining. The method is extremely reproducible, For slides stained by a single experimenter in one batch on one day, the coefficient of variation between replicate means is 1.2%, The image analysis protocol gave a linear response with increasing antigen concentration, as determined by using purified antigen dried onto slides. The revisions to the standard protocol presented here can also be applied to nonquantitative staining, It will help users of immunofluorescence to maximize their staining and may enable the detection of previously undetected antigens.