Evidence for a persistent microbial seed bank throughout the global ocean

被引:186
作者
Gibbons, Sean M. [1 ,3 ]
Caporaso, J. Gregory [3 ,4 ]
Pirrung, Meg [5 ]
Field, Dawn [6 ]
Knight, Rob [7 ,8 ]
Gilbert, Jack A. [1 ,2 ,3 ]
机构
[1] Univ Chicago, Grad Program Biophys Sci, Chicago, IL 60637 USA
[2] Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA
[3] Argonne Natl Lab, Inst Genom & Syst Biol, Lemont, IL 60439 USA
[4] No Arizona Univ, Dept Comp Sci, Flagstaff, AZ 86011 USA
[5] Univ Colorado Denver, Dept Pharmacol, Aurora, CO 80303 USA
[6] NERC, Ctr Ecol & Hydrol, Oxford OX1 3SR, England
[7] Univ Colorado, Dept Chem & Biochem, Boulder, CO 80303 USA
[8] Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80303 USA
基金
美国国家卫生研究院;
关键词
deep sequencing; microbial ecology; rare biosphere; WESTERN ENGLISH-CHANNEL; DIVERSITY; BIOGEOGRAPHY; COMMUNITIES; GREENGENES; BIOSPHERE; BACTERIA; TAXONOMY; ARCHAEA; SEA;
D O I
10.1073/pnas.1217767110
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
070301 [无机化学]; 070403 [天体物理学]; 070507 [自然资源与国土空间规划学]; 090105 [作物生产系统与生态工程];
摘要
Do bacterial taxa demonstrate clear endemism, like macroorganisms, or can one site's bacterial community recapture the total phylogenetic diversity of the world's oceans? Here we compare a deep bacterial community characterization from one site in the English Channel (L4-DeepSeq) with 356 datasets from the International Census of Marine Microbes (ICoMM) taken from around the globe (ranging from marine pelagic and sediment samples to sponge-associated environments). At the L4-DeepSeq site, increasing sequencing depth uncovers greater phylogenetic overlap with the global ICoMM data. This site contained 31.7-66.2% of operational taxonomic units identified in a given ICoMM biome. Extrapolation of this overlap suggests that 1.93 x 10(11) sequences from the L4 site would capture all ICoMM bacterial phylogenetic diversity. Current technology trends suggest this limit may be attainable within 3 y. These results strongly suggest the marine biosphere maintains a previously undetected, persistent microbial seed bank.
引用
收藏
页码:4651 / 4655
页数:5
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