Sequence type analysis and recombinational tests (START)

被引：433

作者：

Jolley, KA ^{[1
]}

Feil, EJ ^{[1
]}

Chan, MS ^{[1
]}

Maiden, MCJ ^{[1
]}

机构：

[1] Univ Oxford, Dept Zool, Oxford OX1 3PS, England

来源：

BIOINFORMATICS | 2001年 / 17卷 / 12期

基金：

英国惠康基金;

关键词：

D O I：

10.1093/bioinformatics/17.12.1230

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The 32-bit Windows application START is implemented using Visual Basic and C++ and performs analyses to aid in the investigation of bacterial population structure using multilocus sequence data. These analyses include data summary, lineage assignment, and tests for recombination and selection.

引用

页码：1230 / 1231

页数：2

共 8 条

[1] Recombination within natural populations of pathogenic bacteria: Short-term empirical estimates and long-term phylogenetic consequences [J].

Feil, EJ ;

Holmes, EC ;

Bessen, DE ;

Chan, MS ;

Day, NPJ ;

Enright, MC ;

Goldstein, R ;

Hood, DW ;

Kalla, A ;

Moore, CE ;

Zhou, JJ ;

Spratt, BG .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (01) :182-187

[2] Carried meningococci in the Czech Republic: A diverse recombining population [J].

Jolley, KA ;

Kalmusova, J ;

Feil, EJ ;

Gupta, S ;

Musilek, M ;

Kriz, P ;

Maiden, MCJ .

JOURNAL OF CLINICAL MICROBIOLOGY, 2000, 38 (12) :4492-4498

[3] Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms [J].

Maiden, MCJ ;

Bygraves, JA ;

Feil, E ;

Morelli, G ;

Russell, JE ;

Urwin, R ;

Zhang, Q ;

Zhou, JJ ;

Zurth, K ;

Caugant, DA ;

Feavers, IM ;

Achtman, M ;

Spratt, BG .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (06) :3140-3145

[4]

MAYNARDSMITH J, 1993, P NATIONAL ACADEMY S, V90, P4384

[5]

NEI M, 1986, MOL BIOL EVOL, V3, P418

[6]

SAWYER S, 1989, MOL BIOL EVOL, V6, P526

[7]

SMITH JM, 1992, J MOL EVOL, V34, P126

[8] Detecting recombination from gene trees [J].

Smith, JM ;

Smith, NH .

MOLECULAR BIOLOGY AND EVOLUTION, 1998, 15 (05) :590-599

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