Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States

被引:64
作者
Nguyen, H. D. T. [1 ]
Seifert, K. A. [1 ]
机构
[1] Agr & Agri Food Canada, Bodivers Theme Mycol & Bot, Ottawa, ON K1A 0C6, Canada
来源
PERSOONIA | 2008年 / 21卷
基金
加拿大自然科学与工程研究理事会;
关键词
aleurioconidium; chlamydospore; cytochrome oxidase subunit I (Cox1); internal transcribed spacer (ITS); Leotiomycetes;
D O I
10.3767/003158508X361334
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Three new species of Leohumicola (anamorphic Leotiomycetes) are described using morphological characters and phylogenetic analyses of DNA barcodes. Leohumicola levissima and L. atra were isolated from soils collected after forest fires in Crater Lake National Park, United States. Leohumicola incrustata was isolated from burned fynbos from the Cape of Good Hope Nature Reserve, South Africa. The three species exhibit characteristic Leohumicola morphology but are morphologically distinct based on condial characters. Two DNA barcode regions, the Internal Transcribed Spacer (ITS) nuclear rDNA region and the cytochrome oxidase subunit I (Cox 1) mitochondrial gene, were sequenced. Single-gene parsimony, dual-gene parsimony and dual-gene Bayesian inference phylogenetic analyses support L. levissima, L. atra, L. incrustata as distinct phylogenetic species. Both ITS and Cox1 barcodes are effective for the molecular identification of Leohomicola species.
引用
收藏
页码:57 / 69
页数:13
相关论文
共 20 条
  • [1] NEW LOOK AT STATISTICAL-MODEL IDENTIFICATION
    AKAIKE, H
    [J]. IEEE TRANSACTIONS ON AUTOMATIC CONTROL, 1974, AC19 (06) : 716 - 723
  • [2] Cowling R., 1995, FYNBOS S AFRICAS UNI
  • [3] DECOCK AWA, 2004, STUD MYCOL, V50, P481
  • [4] Parsimony jackknifing outperforms neighbor-joining
    Farris, JS
    Albert, VA
    Kallersjo, M
    Lipscomb, D
    Kluge, AG
    [J]. CLADISTICS, 1996, 12 (02) : 99 - 124
  • [5] DNA barcodes distinguish species of tropical Lepidoptera
    Hajibabaei, M
    Janzen, DH
    Burns, JM
    Hallwachs, W
    Hebert, PDN
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (04) : 968 - 971
  • [6] Leohumicola, a new genus of heat-resistant hyphomycetes
    Hambleton, S
    Nickerson, NL
    Seifert, KA
    [J]. STUDIES IN MYCOLOGY, 2005, (53) : 29 - 52
  • [7] The genus Oidiodendron:: species delimitation and phylogenetic relationships based on nuclear ribosomal DNA analysis
    Hambleton, S
    Egger, KN
    Currah, RS
    [J]. MYCOLOGIA, 1998, 90 (05) : 854 - 868
  • [8] DATING OF THE HUMAN APE SPLITTING BY A MOLECULAR CLOCK OF MITOCHONDRIAL-DNA
    HASEGAWA, M
    KISHINO, H
    YANO, TA
    [J]. JOURNAL OF MOLECULAR EVOLUTION, 1985, 22 (02) : 160 - 174
  • [9] JACKSON ED, 1995, 9601 AGR AGR CAN ATL
  • [10] MAFFT version 5: improvement in accuracy of multiple sequence alignment
    Katoh, K
    Kuma, K
    Toh, H
    Miyata, T
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 (02) : 511 - 518