Why is the initiation nick site of an AT-rich rolling circle plasmid at the tip of a GC-rich cruciform?

被引:38
作者
Jin, RZ [1 ]
FernandezBeros, ME [1 ]
Novick, RP [1 ]
机构
[1] NYU,SCH MED,SKIRBALL INST BIOMOL MED,NEW YORK,NY 10016
关键词
cruciform; initiation nicking site; recycling; RepC; rolling circle;
D O I
10.1093/emboj/16.14.4456
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
pT181 and other closely related rolling circle plasmids have the nicking site for initiation of replication between the arms of a GC-rich inverted repeat sequence adjacent to the binding site for the dimeric initiator protein, Replication is initiated by the initiator-induced extrusion of this sequence as a cruciform, creating a single-stranded region for nicking by the protein, Nicking is followed by assembly of the replisome without relaxation of the secondary structure, Following termination, the initiator protein is released with a short oligonucleotide attached to one subunit, which prevents it from being recycled, a necessary feature of the plasmid's replication control system, The modified initiator can cleave single-stranded substrates and can nick and relax supercoiled plasmid DNA weakly, Although it can bind to its recognition sequence in the leading strand origin, the modified protein cannot induce cruciform extrusion, and it is proposed that this inability is the key to understanding the biological rationale for having the nicking site at the tip of a cruciform: the need to provide the functional initiator with a catalytic advantage over the modified one sufficient to offset the numerical advantage and metabolic stability of the latter.
引用
收藏
页码:4456 / 4466
页数:11
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