Getting the genome in shape: the formation of loops, domains and compartments

被引:79
作者
Bouwman, Britta A. M.
de Laat, Wouter [1 ]
机构
[1] Hubrecht Inst KNAW, NL-3584 CT Utrecht, Netherlands
来源
GENOME BIOLOGY | 2015年 / 16卷
基金
欧洲研究理事会;
关键词
EMBRYONIC STEM-CELLS; BETA-GLOBIN LOCUS; CHROMOSOME CONFORMATION CAPTURE; NUCLEAR LAMINA INTERACTIONS; ORDER CHROMATIN-STRUCTURE; LONG-RANGE INTERACTIONS; GENE-EXPRESSION; MITOTIC CHROMATIN; TRANSCRIPTION REGULATION; HYPERSENSITIVE SITES;
D O I
10.1186/s13059-015-0730-1
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 [微生物学]; 090105 [作物生产系统与生态工程];
摘要
The hierarchical levels of genome architecture exert transcriptional control by tuning the accessibility and proximity of genes and regulatory elements. Here, we review current insights into the trans-acting factors that enable the genome to flexibly adopt different functionally relevant conformations.
引用
收藏
页数:9
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共 113 条
[1]
Chromosomal Dynamics at the Shh Locus: Limb Bud-Specific Differential Regulation of Competence and Active Transcription [J].
Amano, Takanori ;
Sagai, Tomoko ;
Tanabe, Hideyuki ;
Mizushina, Yoichi ;
Nakazawa, Hiromi ;
Shiroishi, Toshihiko .
DEVELOPMENTAL CELL, 2009, 16 (01) :47-57
[2]
Perinuclear localization of chromatin facilitates transcriptional silencing [J].
Andrulis, ED ;
Neiman, AM ;
Zappulla, DC ;
Sternglanz, R .
NATURE, 1998, 394 (6693) :592-595
[3]
Genome-wide Chromatin Interactions of the Nanog Locus in Pluripotency, Differentiation, and Reprogramming [J].
Apostolou, Effie ;
Ferrari, Francesco ;
Walsh, Ryan M. ;
Bar-Nur, Ori ;
Stadtfeld, Matthias ;
Cheloufi, Sihem ;
Stuart, Hannah T. ;
Polo, Jose M. ;
Ohsumi, Toshiro K. ;
Borowsky, Mark L. ;
Kharchenko, Peter V. ;
Park, Peter J. ;
Hochedlinger, Konrad .
CELL STEM CELL, 2013, 12 (06) :699-712
[4]
Armelin-Correa Lucia M, 2014, Bioarchitecture, V4, P160, DOI 10.4161/19490992.2014.982934
[5]
Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation [J].
Ayyanathan, K ;
Lechner, MS ;
Bell, P ;
Maul, GG ;
Schultz, DC ;
Yamada, Y ;
Tanaka, K ;
Torigoe, K ;
Rauscher, FJ .
GENES & DEVELOPMENT, 2003, 17 (15) :1855-1869
[6]
Polycomb-Dependent Regulatory Contacts between Distant Hox Loci in Drosophila [J].
Bantignies, Frederic ;
Roure, Virginie ;
Comet, Itys ;
Leblanc, Benjamin ;
Schuettengruber, Bernd ;
Bonnet, Jerome ;
Tixier, Vanessa ;
Mas, Andre ;
Cavalli, Giacomo .
CELL, 2011, 144 (02) :214-226
[7]
The protein CTCF is required for the enhancer blocking activity of vertebrate insulators [J].
Bell, AC ;
West, AG ;
Felsenfeld, G .
CELL, 1999, 98 (03) :387-396
[8]
A Reconfigured Pattern of MLL Occupancy within Mitotic Chromatin Promotes Rapid Transcriptional Reactivation Following Mitotic Exit [J].
Blobel, Gerd A. ;
Kadauke, Stephan ;
Wang, Eric ;
Lau, Alan W. ;
Zuber, Johannes ;
Chou, Margaret M. ;
Vakoc, Christopher R. .
MOLECULAR CELL, 2009, 36 (06) :970-983
[9]
Molecular Signals of Epigenetic States [J].
Bonasio, Roberto ;
Tu, Shengjiang ;
Reinberg, Danny .
SCIENCE, 2010, 330 (6004) :612-616
[10]
Mechanisms of ATP-dependent nucleosome sliding [J].
Bowman, Gregory D. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2010, 20 (01) :73-81