Non-uniformly sampled double-TROSY hNcaNH experiments for NMR sequential assignments of large proteins

被引:58
作者
Frueh, DP
Sun, ZYJ
Vosburg, DA
Walsh, CT
Hoch, JC
Wagner, G
机构
[1] Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
[2] Univ Connecticut, Dept Mol Microbial & Struct Biol, Ctr Hlth, Farmington, CT 06030 USA
关键词
D O I
10.1021/ja0584222
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The initial step of protein NMR resonance assignments typically identifies the sequence positions of H-1-N-15 HSQC cross-peaks. This is usually achieved by tediously comparing strips of multiple triple-resonance experiments. More conveniently, this could be obtained directly with hNcaNH and hNcocaNH-type experiments. However, in large proteins and at very high fields, rapid transverse relaxation severely limits the sensitivity of these experiments, and the limited spectral resolution obtainable in conventionally recorded experiments leaves many assignments ambiguous. We have developed alternative hNcaNH experiments that overcome most of these limitations. The TROSY technique was implemented for semiconstant time evolutions in both indirect dimensions, which results in remarkable sensitivity and resolution enhancements. Non-uniform sampling in both indirect dimensions combined with Maximum Entropy (MaxEnt) reconstruction enables such dramatic resolution enhancement while maintaining short measuring times. Experiments are presented that provide either bidirectional or unidirectional connectivities. The experiments do not involve carbonyl coherences and thus do not suffer from fast chemical shift anisotropy-mediated relaxation otherwise encountered at very high fields. The method was applied to a 300 mu M sample of a 37 kDa fragment of the E. coli enterobactin synthetase module EntF, for which high-resolution spectra with an excellent signal-to-noise ratio were obtained within 4 days each.
引用
收藏
页码:5757 / 5763
页数:7
相关论文
共 31 条
[1]   Intraresidue HNCA and COHNCA experiments for protein backbone resonance assignment [J].
Brutscher, B .
JOURNAL OF MAGNETIC RESONANCE, 2002, 156 (01) :155-159
[2]   OPTIMIZATION OF SHAPED SELECTIVE PULSES FOR NMR USING A QUATERNION DESCRIPTION OF THEIR OVERALL PROPAGATORS [J].
EMSLEY, L ;
BODENHAUSEN, G .
JOURNAL OF MAGNETIC RESONANCE, 1992, 97 (01) :135-148
[3]   NMR spectroscopy: a multifaceted approach to macromolecular structure [J].
Ferentz, AE ;
Wagner, G .
QUARTERLY REVIEWS OF BIOPHYSICS, 2000, 33 (01) :29-65
[4]   C-13 LINE NARROWING BY H-2 DECOUPLING IN H-2/C-13/N-15-ENRICHED PROTEINS - APPLICATION TO TRIPLE-RESONANCE 4D J-CONNECTIVITY OF SEQUENTIAL AMIDES [J].
GRZESIEK, S ;
ANGLISTER, J ;
REN, H ;
BAX, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1993, 115 (10) :4369-4370
[5]  
GRZESIEK S, 1993, J BIOMOL NMR, V3, P185
[6]  
Hoch J. C., 1996, NMR DATA PROCESSING
[7]   PURE ABSORPTION GRADIENT ENHANCED HETERONUCLEAR SINGLE QUANTUM CORRELATION SPECTROSCOPY WITH IMPROVED SENSITIVITY [J].
KAY, LE ;
KEIFER, P ;
SAARINEN, T .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (26) :10663-10665
[8]  
Keller R., 2004, COMPUTER AIDED RESON
[9]   Transverse-relaxation-optimized (TROSY) gradient-enhanced triple-resonance NMR spectroscopy [J].
Loria, JP ;
Rance, M ;
Palmer, AG .
JOURNAL OF MAGNETIC RESONANCE, 1999, 141 (01) :180-184
[10]   Fast acquisition of NMR spectra using Fourier transform of non-equispaced data [J].
Marion, D .
JOURNAL OF BIOMOLECULAR NMR, 2005, 32 (02) :141-150