共 53 条
Yeast DNA polymerase η utilizes an induced-fit mechanism of nucleotide incorporation
被引:114
作者:

Washington, MT
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机构:
Univ Texas, Med Branch, Sealy Ctr Mol Sci, Galveston, TX 77555 USA Univ Texas, Med Branch, Sealy Ctr Mol Sci, Galveston, TX 77555 USA

Prakash, L
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Univ Texas, Med Branch, Sealy Ctr Mol Sci, Galveston, TX 77555 USA Univ Texas, Med Branch, Sealy Ctr Mol Sci, Galveston, TX 77555 USA

Prakash, S
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Univ Texas, Med Branch, Sealy Ctr Mol Sci, Galveston, TX 77555 USA Univ Texas, Med Branch, Sealy Ctr Mol Sci, Galveston, TX 77555 USA
机构:
[1] Univ Texas, Med Branch, Sealy Ctr Mol Sci, Galveston, TX 77555 USA
来源:
关键词:
D O I:
10.1016/S0092-8674(01)00613-4
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
DNA polymerase eta (Pol eta) is unique among eukaryotic DNA polymerases in its proficient ability to replicate through distorting DNA lesions, and Pol eta synthesizes DNA with a low fidelity. Here, we use pre-steady-state kinetics to investigate the mechanism of nucleotide incorporation by Pol eta and show that it utilizes an induced-fit mechanism to selectively incorporate the correct nucleotide. Pol eta discriminates poorly between the correct and incorrect nucleotide at both the initial nucleotide binding step and at the subsequent induced-fit conformational change step, which precedes the chemical step of phosphodiester bond formation. This property enables Pol eta to bypass lesions with distorted DNA geometries, and it bestows upon the enzyme a low fidelity.
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页码:917 / 927
页数:11
相关论文
共 53 条
[1]
DNA polymerase beta: Structure-fidelity relationship from pre-steady-state kinetic analyses of all possible correct and incorrect base pairs for wild type and R283A mutant
[J].
Ahn, J
;
Werneburg, BG
;
Tsai, MD
.
BIOCHEMISTRY,
1997, 36 (05)
:1100-1107

Ahn, J
论文数: 0 引用数: 0
h-index: 0
机构: Department of Chemistry, Ohio State University, Columbus

Werneburg, BG
论文数: 0 引用数: 0
h-index: 0
机构: Department of Chemistry, Ohio State University, Columbus

Tsai, MD
论文数: 0 引用数: 0
h-index: 0
机构: Department of Chemistry, Ohio State University, Columbus
[2]
A TETRAHEDRAL INTERMEDIATE IN THE EPSP SYNTHASE REACTION OBSERVED BY RAPID QUENCH KINETICS
[J].
ANDERSON, KS
;
SIKORSKI, JA
;
JOHNSON, KA
.
BIOCHEMISTRY,
1988, 27 (19)
:7395-7406

ANDERSON, KS
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT MOLEC & CELL BIOL, UNIVERSITY PK, PA 16802 USA PENN STATE UNIV, DEPT MOLEC & CELL BIOL, UNIVERSITY PK, PA 16802 USA

SIKORSKI, JA
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT MOLEC & CELL BIOL, UNIVERSITY PK, PA 16802 USA PENN STATE UNIV, DEPT MOLEC & CELL BIOL, UNIVERSITY PK, PA 16802 USA

JOHNSON, KA
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT MOLEC & CELL BIOL, UNIVERSITY PK, PA 16802 USA PENN STATE UNIV, DEPT MOLEC & CELL BIOL, UNIVERSITY PK, PA 16802 USA
[3]
ANALYSIS OF NUMERICAL-METHODS FOR COMPUTER-SIMULATION OF KINETIC PROCESSES - DEVELOPMENT OF KINSIM - A FLEXIBLE, PORTABLE SYSTEM
[J].
BARSHOP, BA
;
WRENN, RF
;
FRIEDEN, C
.
ANALYTICAL BIOCHEMISTRY,
1983, 130 (01)
:134-145

BARSHOP, BA
论文数: 0 引用数: 0
h-index: 0

WRENN, RF
论文数: 0 引用数: 0
h-index: 0

FRIEDEN, C
论文数: 0 引用数: 0
h-index: 0
[4]
DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase β -: Implication for the identity of the rate-limiting conformational change
[J].
Berg, BJV
;
Beard, WA
;
Wilson, SH
.
JOURNAL OF BIOLOGICAL CHEMISTRY,
2001, 276 (05)
:3408-3416

Berg, BJV
论文数: 0 引用数: 0
h-index: 0
机构:
NIEHS, Struct Biol Lab, NIH, Res Triangle Pk, NC 27709 USA NIEHS, Struct Biol Lab, NIH, Res Triangle Pk, NC 27709 USA

Beard, WA
论文数: 0 引用数: 0
h-index: 0
机构:
NIEHS, Struct Biol Lab, NIH, Res Triangle Pk, NC 27709 USA NIEHS, Struct Biol Lab, NIH, Res Triangle Pk, NC 27709 USA

Wilson, SH
论文数: 0 引用数: 0
h-index: 0
机构:
NIEHS, Struct Biol Lab, NIH, Res Triangle Pk, NC 27709 USA NIEHS, Struct Biol Lab, NIH, Res Triangle Pk, NC 27709 USA
[5]
KINETIC CHARACTERIZATION OF THE POLYMERASE AND EXONUCLEASE ACTIVITIES OF THE GENE-43 PROTEIN OF BACTERIOPHAGE-T4
[J].
CAPSON, TL
;
PELISKA, JA
;
KABOORD, BF
;
FREY, MW
;
LIVELY, C
;
DAHLBERG, M
;
BENKOVIC, SJ
.
BIOCHEMISTRY,
1992, 31 (45)
:10984-10994

CAPSON, TL
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA

PELISKA, JA
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA

KABOORD, BF
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA

FREY, MW
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA

LIVELY, C
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA

DAHLBERG, M
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA

BENKOVIC, SJ
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA PENN STATE UNIV, DEPT CHEM, DAVEY LAB 152, University Pk, PA 16802 USA
[6]
DETERMINATION OF PYRIMIDINE DIMER UNWINDING ANGLE BY MEASUREMENT OF DNA ELECTROPHORETIC MOBILITY
[J].
CIARROCCHI, G
;
PEDRINI, AM
.
JOURNAL OF MOLECULAR BIOLOGY,
1982, 155 (02)
:177-183

CIARROCCHI, G
论文数: 0 引用数: 0
h-index: 0

PEDRINI, AM
论文数: 0 引用数: 0
h-index: 0
[7]
Replication fork bypass of a pyrimidine dimer blocking leading strand DNA synthesis
[J].
CordeiroStone, M
;
Zaritskaya, LS
;
Price, LK
;
Kaufmann, WK
.
JOURNAL OF BIOLOGICAL CHEMISTRY,
1997, 272 (21)
:13945-13954

CordeiroStone, M
论文数: 0 引用数: 0
h-index: 0
机构: Dept. of Pathol. and Lab. Medicine, Lineberger Compreh. Cancer Center, University of North Carolina, Chapel Hill

Zaritskaya, LS
论文数: 0 引用数: 0
h-index: 0
机构: Dept. of Pathol. and Lab. Medicine, Lineberger Compreh. Cancer Center, University of North Carolina, Chapel Hill

Price, LK
论文数: 0 引用数: 0
h-index: 0
机构: Dept. of Pathol. and Lab. Medicine, Lineberger Compreh. Cancer Center, University of North Carolina, Chapel Hill

Kaufmann, WK
论文数: 0 引用数: 0
h-index: 0
机构: Dept. of Pathol. and Lab. Medicine, Lineberger Compreh. Cancer Center, University of North Carolina, Chapel Hill
[8]
KINETIC MECHANISM OF DNA-POLYMERASE-I (KLENOW FRAGMENT) - IDENTIFICATION OF A 2ND CONFORMATIONAL CHANGE AND EVALUATION OF THE INTERNAL EQUILIBRIUM-CONSTANT
[J].
DAHLBERG, ME
;
BENKOVIC, SJ
.
BIOCHEMISTRY,
1991, 30 (20)
:4835-4843

DAHLBERG, ME
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT CHEM, UNIVERSITY PK, PA 16802 USA PENN STATE UNIV, DEPT CHEM, UNIVERSITY PK, PA 16802 USA

BENKOVIC, SJ
论文数: 0 引用数: 0
h-index: 0
机构:
PENN STATE UNIV, DEPT CHEM, UNIVERSITY PK, PA 16802 USA PENN STATE UNIV, DEPT CHEM, UNIVERSITY PK, PA 16802 USA
[9]
Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution
[J].
Doublié, S
;
Tabor, S
;
Long, AM
;
Richardson, CC
;
Ellenberger, T
.
NATURE,
1998, 391 (6664)
:251-258

Doublié, S
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA

Tabor, S
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA

Long, AM
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA

Richardson, CC
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA

Ellenberger, T
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
[10]
The mechanism of action of T7 DNA polymerase
[J].
Doublié, S
;
Ellenberger, T
.
CURRENT OPINION IN STRUCTURAL BIOLOGY,
1998, 8 (06)
:704-712

Doublié, S
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA

Ellenberger, T
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA