Temperature-dependent isotope effects in soybean lipoxygenase-1: Correlating hydrogen tunneling with protein dynamics

被引:429
作者
Knapp, MJ
Rickert, K
Klinman, JP [1 ]
机构
[1] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
关键词
D O I
10.1021/ja012205t
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The hydrogen-atom transfer in soybean lipoxygenase-1 (SLO) exhibits a large kinetic isotope effect on k(cat) (KIE = 81) near room temperature and a very weak temperature dependence (E-act = 2.1 kcal/mol). These properties are consistent with H. transfer that occurs entirely by a tunneling event. Mutants of SLO were prepared, and the temperature dependence of the KIE was measured, to test for alterations in the tunneling behavior. All mutants studied exhibit KIES of similar, large magnitude at 30 degreesC, despite an up to 3 orders of magnitude change in k(cat). E-act for two of the mutants (Leu(754) --> Ala, Leu(546) --> Ala) is larger than for wild-type (WT), and the KIE becomes slightly more temperature dependent. In contrast, Ile(553) --> Ala exhibits k(cat) and E-act parameters similar to wild-type soybean lipoxygenase-1 (WT-SLO) for protiated substrate; however, the KIE is markedly temperature dependent. The behavior of the former two mutants could reflect increased reorganization energies (lambda), but the behavior of the latter mutant is inconsistent with this description. We have invoked a full H-. tunneling model (Kuznetsov, A. M.; Ulstrup, J. Can. J. Chem. 1999, 77, 1085-1096) to explain the temperature dependence of the KIE, which is indicative of the extent to which distance sampling (gating) modulates hydrogen transfer. WT-SLO exhibits a very small E-act and a nearly temperature-independent KIE, which was modeled as arising from a compressed hydrogen transfer distance with little modulation of the hydrogen transfer distance. The observations on the Leu(754) --> Ala and Leu(546) --> Ala mutants were modeled as arising from a slightly less compressed active site with greater modulation of the hydrogen transfer distance by environmental dynamics. Finally, the observed behavior of the Ile(553) --> Ala mutant indicates a relaxed active site with extensive involvement of gating to facilitate hydrogen transfer. We conclude that WT-SLO has an active site structure that is well organized to support hydrogen tunneling and that mutations perturb structural elements that support hydrogen tunneling. Modest alterations in active site residues increase lambda and/or increase the hydrogen transfer distance, thereby affecting the probability that tunneling can occur. These studies allow the detection and characterization of a protein-gating mode in catalysis.
引用
收藏
页码:3865 / 3874
页数:10
相关论文
共 47 条
[1]   Activated chemistry in the presence of a strongly symmetrically coupled vibration [J].
Antoniou, D ;
Schwartz, SD .
JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (09) :3620-3625
[2]   Large kinetic isotope effects in enzymatic proton transfer and the role of substrate oscillations [J].
Antoniou, D ;
Schwartz, SD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (23) :12360-12365
[3]   Internal enzyme motions as a source of catalytic activity: Rate-promoting vibrations and hydrogen tunneling [J].
Antoniou, D ;
Schwartz, SD .
JOURNAL OF PHYSICAL CHEMISTRY B, 2001, 105 (23) :5553-5558
[4]   Nonadiabatic effects in a method that combines classical and quantum mechanics [J].
Antoniou, D ;
Schwartz, SD .
JOURNAL OF CHEMICAL PHYSICS, 1996, 104 (10) :3526-3530
[5]  
BAHNSON BJ, 1995, METHOD ENZYMOL, V249, P373
[6]   A link between protein structure and enzyme catalyzed hydrogen tunneling [J].
Bahnson, BJ ;
Colby, TD ;
Chin, JK ;
Goldstein, BM ;
Klinman, JP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (24) :12797-12802
[7]   Enzymatic H-transfer requires vibration-driven extreme tunneling [J].
Basran, J ;
Sutcliffe, MJ ;
Scrutton, NS .
BIOCHEMISTRY, 1999, 38 (10) :3218-3222
[8]   DYNAMIC THEORY OF PROTON TUNNELING TRANSFER RATES IN SOLUTION - GENERAL FORMULATION [J].
BORGIS, D ;
HYNES, JT .
CHEMICAL PHYSICS, 1993, 170 (03) :315-346
[9]   NONADIABATIC PROTON-TRANSFER REACTION-RATES IN SOLUTION - A SEMICLASSICAL MICROSCOPIC FORMALISM [J].
BORGIS, D ;
HYNES, T .
JOURNAL DE CHIMIE PHYSIQUE ET DE PHYSICO-CHIMIE BIOLOGIQUE, 1990, 87 (05) :819-829
[10]   Curve crossing formulation for proton transfer reactions in solution [J].
Borgis, D ;
Hynes, JT .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (04) :1118-1128