GeneMining: Identification, Visualization, and Interpretation of Brain Ageing Signatures

被引:3
作者
Salle, Paola [1 ]
Bringay, Sandra [1 ,2 ]
Teisseire, Maguelonne [1 ]
Chakkour, Feirouz [1 ]
Roche, Mathieu [1 ]
Rassoul, Ronza Abdel [3 ]
Verdier, Jean-Michel [3 ]
Devau, Gina [3 ]
机构
[1] Montpellier 2 Univ, Natl Ctr Sci Res, Robot & Microelect, Montpellier Lab Informat, 161 Rue Ada, F-34392 Montpellier, France
[2] Montpellier 3 Univ, Math & Informat Dept, Montpellier, France
[3] Montpellier 2 Univ, Mol Mech Neurodegenerative Disorder, EPHE, Inserm U710, Montpellier, France
来源
MEDICAL INFORMATICS IN A UNITED AND HEALTHY EUROPE | 2009年 / 150卷
关键词
bioinformatics; transcriptomic data; sequential pattern mining; data mining;
D O I
10.3233/978-1-60750-044-5-767
中图分类号
R19 [保健组织与事业(卫生事业管理)];
学科分类号
摘要
Transcriptomic technologies are promising tools for identifying new genes involved in cerebral ageing or in neurodegenerative diseases such as Alzheimer's disease. These technologies produce massive biological data, which so far are extremely difficult to exploit. In this context, we propose GeneMining, a multidisciplinary methodology, which aims at developing new strategies to analyse such data, and to design interactive tools to help biologists to identify, visualize and interpret brain ageing signatures. In order to address the specific problem of brain ageing signatures discovery, we combine and apply existing tools with emphasis to a new efficient data mining method based on sequential patterns.
引用
收藏
页码:767 / 771
页数:5
相关论文
共 14 条
[1]  
Butte Atul J, 2006, AMIA Annu Symp Proc, P106
[2]  
Demner-Fushman Dina, 2006, AMIA Annu Symp Proc, P190
[3]   Cluster analysis and display of genome-wide expression patterns [J].
Eisen, MB ;
Spellman, PT ;
Brown, PO ;
Botstein, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (25) :14863-14868
[4]   Functional genomics meets neurodegenerative disorders Part II:: Application and data integration [J].
Hoerndli, F ;
David, DC ;
Götz, J .
PROGRESS IN NEUROBIOLOGY, 2005, 76 (03) :169-188
[5]  
Lee B., 2006, Proceedings of the 2006 AVI Workshop on BEyond Time and Errors, P1, DOI DOI 10.1145/1168149.1168168
[6]  
Lopez Jose., 2000, SOCIAL STRUCTURE
[7]   Data integration and genomic medicine [J].
Louie, Brenton ;
Mork, Peter ;
Martin-Sanchez, Fernando ;
Halevy, Alon ;
Tarczy-Hornoch, Peter .
JOURNAL OF BIOMEDICAL INFORMATICS, 2007, 40 (01) :5-16
[8]  
Pan Feng., 2003, Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD '03, P637, DOI DOI 10.1145/956750.956832
[9]  
Pensa R. G., 2008, P 2008 SIAM INT C DA
[10]  
Rioult F., 2004, P ECML PKDD DISC CHA, P127