AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR

被引:4687
作者
Laskowski, RA
Rullmann, JAC
MacArthur, MW
Kaptein, R
Thornton, JM
机构
[1] UNIV LONDON UNIV COLL, DEPT BIOCHEM & MOL BIOL, BIOMOL STRUCT & MODELLING UNIT, LONDON WC1E 6BT, ENGLAND
[2] UNIV UTRECHT, BIJVOET CTR BIOMOL RES, DEPT NMR SPECT, NL-3584 CH UTRECHT, NETHERLANDS
关键词
computer software; structure validation; restraint analysis; protein geometry;
D O I
10.1007/BF00228148
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The AQUA and PROCHECK-NMR programs provide a means of validating the geometry and restraint violations of an ensemble of protein structures solved by solution NMR. The outputs include a detailed breakdown of the restraint violations, a number of plots in PostScript format and summary statistics. These various analyses indicate both the degree of agreement of the model structures with the experimental data, and the quality of their geometrical properties. They are intended to be of use both to support ongoing NMR structure determination and in the validation of the final results.
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页码:477 / 486
页数:10
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