Using genomic inbreeding coefficient estimates for homozygosity mapping of rare recessive traits:: Application to Taybi-Linder syndrome

被引:43
作者
Leutenegger, Anne-Louise
Labalme, Audrey
Génin, Emmanuelle
Toutain, Annick
Steichen, Elisabeth
Clerget-Darpoux, Françoise
Edery, Patrick
机构
[1] INSERM, U535, F-94817 Villejuif, France
[2] INSERM, U679, Paris, France
[3] Univ Paris 06, Paris, France
[4] Hop La Pitie Salpetriere, Paris, France
[5] Univ Paris 11, Paris, France
[6] Univ Lyon 1, Hospices Civils Lyon, Lyon, France
[7] Univ Lyon 1, EA 3739, Lyon, France
[8] CHU Tours, Tours, France
[9] Univ Klin Kinder & Jugendheilkunde, Innsbruck, Austria
关键词
D O I
10.1086/504640
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The use of inbred patients whose exact genealogy may not be available is of primary interest in mapping genes involved in rare recessive diseases. We show here that this can be achieved by estimating inbreeding coefficients from the patients' genomic information and using these estimates to perform homozygosity mapping. We show the interest of the approach by mapping a gene for Taybi-Linder syndrome to chromosome 2q, with the use of a key patient with no genealogical information.
引用
收藏
页码:62 / 66
页数:5
相关论文
共 16 条
[1]  
[Anonymous], POPULATION, DOI [10.2307/1527654, DOI 10.2307/1527654]
[2]  
COCKERHAM CC, 1971, GENETICS, V69, P235
[3]  
DENNISTON C, 1968, THESIS U WISCONSIN M
[4]   Allegro, a new computer program for multipoint linkage analysis [J].
Gudbjartsson, DF ;
Jonasson, K ;
Frigge, ML ;
Kong, A .
NATURE GENETICS, 2000, 25 (01) :12-13
[5]   A RECURSIVE ALGORITHM FOR THE CALCULATION OF IDENTITY COEFFICIENTS [J].
KARIGL, G .
ANNALS OF HUMAN GENETICS, 1981, 45 (JUL) :299-305
[6]   A high-resolution recombination map of the human genome [J].
Kong, A ;
Gudbjartsson, DF ;
Sainz, J ;
Jonsdottir, GM ;
Gudjonsson, SA ;
Richardsson, B ;
Sigurdardottir, S ;
Barnard, J ;
Hallbeck, B ;
Masson, G ;
Shlien, A ;
Palsson, ST ;
Frigge, ML ;
Thorgeirsson, TE ;
Gulcher, JR ;
Stefansson, K .
NATURE GENETICS, 2002, 31 (03) :241-247
[7]   HOMOZYGOSITY MAPPING - A WAY TO MAP HUMAN RECESSIVE TRAITS WITH THE DNA OF INBRED CHILDREN [J].
LANDER, ES ;
BOTSTEIN, D .
SCIENCE, 1987, 236 (4808) :1567-1570
[8]   Estimation of the inbreeding coefficient through use of genomic data [J].
Leutenegger, AL ;
Prum, B ;
Génin, E ;
Verny, C ;
Lemainque, A ;
Clerget-Darpoux, F ;
Thompson, EA .
AMERICAN JOURNAL OF HUMAN GENETICS, 2003, 73 (03) :516-523
[9]   Impact of parental relationships in maximum lod score affected sib-pair method [J].
Leutenegger, AL ;
Génin, E ;
Thompson, EA ;
Clerget-Darpoux, F .
GENETIC EPIDEMIOLOGY, 2002, 23 (04) :413-425
[10]  
LEUTENEGGER AL, 2003, THESIS U PARIS 11 PA