Application of information theory to DNA sequence analysis: A review

被引:55
作者
RomanRoldan, R
BernaolaGalvan, P
Oliver, JL
机构
[1] UNIV MALAGA,DEPT APPL PHYS 2,MALAGA,SPAIN
[2] UNIV GRANADA,INST BIOTECHNOL,GRANADA,SPAIN
关键词
information theory; DNA sequences; entropy; chaos-game representation;
D O I
10.1016/0031-3203(95)00145-X
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
The analysis of DNA sequences through information theory methods is reviewed from the beginning in the 70s. The subject is addressed within a broad context, describing in some detail the cornerstone contributions in the field. The emerging interest concerning long-range correlations and the mosaic structure of DNA sequences is considered from our own point of view. A recent procedure developed by the authors is also outlined. Copyright (C) 1996 Pattern Recognition Society.
引用
收藏
页码:1187 / 1194
页数:8
相关论文
共 28 条
[1]   AMINO-ACID SUBSTITUTION MATRICES FROM AN INFORMATION THEORETIC PERSPECTIVE [J].
ALTSCHUL, SF .
JOURNAL OF MOLECULAR BIOLOGY, 1991, 219 (03) :555-565
[2]  
Barnsley M. F., 2014, Fractals Everywhere
[3]  
BERNAOLAGALVAN P, 1994, CONTRIBUTIONS SEQUEN
[4]  
BRILLOUIN L, 1962, SCI INFORMATION THEO
[5]  
CAVES CM, P PHYS COMP WORKSH
[6]   CHARACTERIZATION OF NUCLEOTIDIC SEQUENCES USING MAXIMUM-ENTROPY TECHNIQUES [J].
COSMI, C ;
CUOMO, V ;
RAGOSTA, M ;
MACCHIATO, MF .
JOURNAL OF THEORETICAL BIOLOGY, 1990, 147 (03) :423-432
[7]   ENTROPY AND THE EVOLUTION OF BIOLOGICAL INFORMATION [J].
EBELING, W ;
VOLKENSTEIN, MV .
PHYSICA A, 1990, 163 (01) :398-402
[8]  
GLATIN L, 1972, INFORMATION THEORY L
[9]  
GUIASU S, 1977, INFORMATION THEORY A
[10]  
HARIRI A, 1988, J THEOR BIOL, V147, P235