New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL)

被引:25
作者
Miyatake, H
Hasegawa, T
Yamano, A
机构
[1] RIKEN, Harima Inst SPring 8, Sayo, Hyogo 6795148, Japan
[2] Rigaku Pharmaxess Inc, Akishima, Tokyo 1968666, Japan
来源
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY | 2006年 / 62卷
关键词
D O I
10.1107/S0907444905041909
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
New techniques are presented for the preparation of iodine derivatives, involving vapour diffusion of iodine. Firstly, in the vaporizing iodine labelling (VIL) technique, a small amount of KI/I-2 solution is enclosed in a crystallization well, with the result that gaseous I-2 molecules diffuse into the crystallization droplets without exerting substantial changes in ionic strength in the target crystals. Once they have diffused into the droplet, the I2 molecules sometimes iodinate accessible tyrosines at ortho positions. Secondly, when iodination is insufficient, the hydrogen peroxide VIL (HYPER-VIL) technique can be further applied to increase the iodination ratio by the addition of a small droplet of hydrogen peroxide (H2O2) to the crystallization well; the gaseous H2O2 also diffuses into the crystallization droplet to emphasize the iodination. These techniques are most effective for phase determination when coupled with softer X-rays, such as those from Cu K alpha or Cr K alpha radiation. The effectiveness of these techniques was assessed using five different crystals. Four of the crystals were successfully iodinated, providing sufficient phasing power for structure determination.
引用
收藏
页码:280 / 289
页数:10
相关论文
共 35 条
[1]   Methods used in the structure determination of bovine mitochondrial F-1 ATPase [J].
Abrahams, JP ;
Leslie, AGW .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1996, 52 :30-42
[2]   Generation, representation and flow of phase information in structure determination:: recent developments in and around SHARP 2.0 [J].
Bricogne, G ;
Vonrhein, C ;
Flensburg, C ;
Schiltz, M ;
Paciorek, W .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2003, 59 :2023-2030
[3]  
Brunger AT, 1998, ACTA CRYSTALLOGR D, V54, P905, DOI 10.1107/s0907444998003254
[4]   A MODEL FOR INTERFACIAL ACTIVATION IN LIPASES FROM THE STRUCTURE OF A FUNGAL LIPASE-INHIBITOR COMPLEX [J].
BRZOZOWSKI, AM ;
DEREWENDA, U ;
DEREWENDA, ZS ;
DODSON, GG ;
LAWSON, DM ;
TURKENBURG, JP ;
BJORKLING, F ;
HUGEJENSEN, B ;
PATKAR, SA ;
THIM, L .
NATURE, 1991, 351 (6326) :491-494
[5]   Apocrustacyanin A1 from the lobster carotenoprotein α-crustacyanin:: crystallization and initial X-ray analysis involving softer X-rays [J].
Chayen, NE ;
Cianci, M ;
Olczak, A ;
Raftery, J ;
Rizkallah, PJ ;
Zagalsky, PF ;
Helliwell, JR .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2000, 56 :1064-1066
[6]   MAD phasing with krypton [J].
Cohen, A ;
Ellis, P ;
Kresge, N ;
Soltis, SM .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2001, 57 :233-238
[7]   New approaches to high-throughput phasing [J].
Dauter, Z .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2002, 12 (05) :674-678
[8]   Can anomalous signal of sulfur become a tool for solving protein crystal structures? [J].
Dauter, Z ;
Dauter, M ;
de La Fortelle, E ;
Bricogne, G ;
Sheldrick, GM .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 289 (01) :83-92
[9]   Novel approach to phasing proteins: derivatization by short cryo-soaking with halides [J].
Dauter, Z ;
Dauter, M ;
Rajashankar, KR .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2000, 56 :232-237
[10]   Triiodide derivatization in protein crystallography [J].
Evans, G ;
Bricogne, G .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2003, 59 :1923-1929