Integration of rapid DNA hybridization and capillary zone electrophoresis using bidirectional isotachophoresis

被引:34
作者
Bahga, Supreet S. [1 ]
Han, Crystal M. [1 ]
Santiago, Juan G. [1 ]
机构
[1] Stanford Univ, Dept Mech Engn, Stanford, CA 94305 USA
关键词
D O I
10.1039/c2an36249j
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
We present a method for rapid, sequence-specific detection of multiple DNA fragments by integrating isotachophoresis (ITP) based DNA hybridization and capillary zone electrophoresis (CZE) using bidirectional ITP. Our method leverages the high preconcentration ability of ITP to accelerate slow, second-order DNA hybridization kinetics, and the high resolving power of CZE to separate and identify reaction products. We demonstrate the speed and sensitivity of our assay by detecting 5 pM, 39 nt ssDNA target within 3 min, using a molecular beacon probe. We also demonstrate the feasibility of our assay for multiplexed detection of multiple-length ssDNA targets by simultaneously detecting 39 and 90 nt ssDNA targets.
引用
收藏
页码:87 / 90
页数:4
相关论文
共 23 条
[1]  
Bahga S. S., ANALYST UNPUB
[2]   Concentration cascade of leading electrolyte using bidirectional isotachophoresis [J].
Bahga, Supreet S. ;
Santiago, Juan G. .
ELECTROPHORESIS, 2012, 33 (06) :1048-1059
[3]   Coupled Isotachophoretic Preconcentration and Electrophoretic Separation Using Bidirectional Isotachophoresis [J].
Bahga, Supreet S. ;
Chambers, Robert D. ;
Santiago, Juan G. .
ANALYTICAL CHEMISTRY, 2011, 83 (16) :6154-6162
[4]   Rapid Detection of Urinary Tract Infections Using Isotachophoresis and Molecular Beacons [J].
Bercovici, M. ;
Kaigala, G. V. ;
Mach, K. E. ;
Han, C. M. ;
Liao, J. C. ;
Santiago, J. G. .
ANALYTICAL CHEMISTRY, 2011, 83 (11) :4110-4117
[5]   Rapid hybridization of nucleic acids using isotachophoresis [J].
Bercovici, Moran ;
Han, Crystal M. ;
Liao, Joseph C. ;
Santiago, Juan G. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (28) :11127-11132
[6]   POLYMERASE-CHAIN REACTION - ANALYSIS OF DNA DNA HYBRIDIZATION BY CAPILLARY ELECTROPHORESIS [J].
BIANCHI, N ;
MISCHIATI, C ;
FERIOTTO, G ;
GAMBARI, R .
NUCLEIC ACIDS RESEARCH, 1993, 21 (15) :3595-3596
[7]  
BOTSTEIN D, 1980, AM J HUM GENET, V32, P314
[8]  
CHEN JW, 1991, J CHROMATOGR, V559, P295, DOI 10.1016/0021-9673(91)80079-V
[9]   Integration of On-Chip Isotachophoresis and Functionalized Hydrogels for Enhanced-Sensitivity Nucleic Acid Detection [J].
Garcia-Schwarz, Giancarlo ;
Santiago, Juan G. .
ANALYTICAL CHEMISTRY, 2012, 84 (15) :6366-6369
[10]   Micro contactor based on isotachophoretic sample transport [J].
Goet, Gabriele ;
Baier, Tobias ;
Hardt, Steffen .
LAB ON A CHIP, 2009, 9 (24) :3586-3593