PhosphoPep-a database of protein phosphorylation sites in model organisms

被引:174
作者
Bodenmiller, Bernd [1 ,2 ]
Campbell, David [3 ]
Gerrits, Bertran [4 ]
Lam, Henry [3 ]
Jovanovic, Marko [2 ,5 ]
Picotti, Paola [1 ]
Schlapbach, Ralph [4 ]
Aebersold, Ruedi [1 ,3 ,6 ,7 ]
机构
[1] Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8093 Zurich, Switzerland
[2] Zurich PhD Program Mol Life Sci, CH-8057 Zurich, Switzerland
[3] Inst Syst Biol, Seattle, WA 98103 USA
[4] Swiss Fed Inst Technol, UZH, Funct Genom Ctr Zurich, CH-8057 Zurich, Switzerland
[5] Univ Zurich, Inst Mol Biol, CH-8057 Zurich, Switzerland
[6] Swiss Fed Inst Technol, Competence Ctr Syst Physiol & Metab Dis, CH-8093 Zurich, Switzerland
[7] Univ Zurich, Fac Sci, CH-8057 Zurich, Switzerland
关键词
D O I
10.1038/nbt1208-1339
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
引用
收藏
页码:1339 / 1340
页数:2
相关论文
共 12 条
[1]   Large-scale characterization of HeLa cell nuclear phosphoproteins [J].
Beausoleil, SA ;
Jedrychowski, M ;
Schwartz, D ;
Elias, JE ;
Villén, J ;
Li, JX ;
Cohn, MA ;
Cantley, LC ;
Gygi, SP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (33) :12130-12135
[2]   A probability-based approach for high-throughput protein phosphorylation analysis and site localization [J].
Beausoleil, Sean A. ;
Villen, Judit ;
Gerber, Scott A. ;
Rush, John ;
Gygi, Steven P. .
NATURE BIOTECHNOLOGY, 2006, 24 (10) :1285-1292
[3]   PhosphoPep-a phosphoproteome resource for systems biology research in Drosophila Kc167 cells [J].
Bodenmiller, Bernd ;
Malmstrom, Johan ;
Gerrits, Bertran ;
Campbell, David ;
Lam, Henry ;
Schmidt, Alexander ;
Rinner, Oliver ;
Mueller, Lukas N. ;
Shannon, Paul T. ;
Pedrioli, Patrick G. ;
Panse, Christian ;
Lee, Hoo-Keun ;
Schlapbach, Ralph ;
Aebersold, Ruedi .
MOLECULAR SYSTEMS BIOLOGY, 2007, 3 (1)
[4]   Reproducible isolation of distinct, overlapping segments of the phosphoproteome [J].
Bodenmiller, Bernd ;
Mueller, Lukas N. ;
Mueller, Markus ;
Domon, Bruno ;
Aebersold, Ruedi .
NATURE METHODS, 2007, 4 (03) :231-237
[5]   Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes [J].
Chen, Feng ;
Mackey, Aaron J. ;
Vermunt, Jeroen K. ;
Roos, David S. .
PLOS ONE, 2007, 2 (04)
[6]   Phospho.ELM:: A database of experimentally verified phosphorylation sites in eukaryotic proteins -: art. no. 79 [J].
Diella, F ;
Cameron, S ;
Gemünd, C ;
Linding, R ;
Via, A ;
Kuster, B ;
Sicheritz-Pontén, T ;
Blom, N ;
Gibson, TJ .
BMC BIOINFORMATICS, 2004, 5 (1)
[7]   PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites [J].
Gnad, Florian ;
Ren, Shubin ;
Cox, Juergen ;
Olsen, Jesper V. ;
Macek, Boris ;
Oroshi, Mario ;
Mann, Matthias .
GENOME BIOLOGY, 2007, 8 (11)
[8]   Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search [J].
Keller, A ;
Nesvizhskii, AI ;
Kolker, E ;
Aebersold, R .
ANALYTICAL CHEMISTRY, 2002, 74 (20) :5383-5392
[9]   Clustal W and clustal X version 2.0 [J].
Larkin, M. A. ;
Blackshields, G. ;
Brown, N. P. ;
Chenna, R. ;
McGettigan, P. A. ;
McWilliam, H. ;
Valentin, F. ;
Wallace, I. M. ;
Wilm, A. ;
Lopez, R. ;
Thompson, J. D. ;
Gibson, T. J. ;
Higgins, D. G. .
BIOINFORMATICS, 2007, 23 (21) :2947-2948
[10]   Large-scale phosphorylation analysis of α-factor-arrested Saccharomyces cerevisiae [J].
Li, Xue ;
Gerber, Scott A. ;
Rudner, Adam D. ;
Beausoleil, Sean A. ;
Haas, Wilhelm ;
Villen, Judit ;
Elias, Joshua E. ;
Gygi, Steve P. .
JOURNAL OF PROTEOME RESEARCH, 2007, 6 (03) :1190-1197