A SNP in the ABCC11 gene is the determinant of human earwax type

被引:185
作者
Yoshiura, K [1 ]
Kinoshita, A
Ishida, T
Ninokata, A
Ishikawa, T
Kaname, T
Bannai, M
Tokunaga, K
Sonoda, S
Komaki, R
Ihara, M
Saenko, VA
Alipov, GK
Sekine, I
Komatsu, K
Takahashi, H
Nakashima, M
Sosonkina, N
Mapendano, CK
Ghadami, M
Nomura, M
Liang, DS
Miwa, N
Kim, DK
Garidkhuu, A
Natsume, N
Ohta, T
Tomita, H
Kaneko, A
Kikuchi, M
Russomando, G
Hirayama, K
Ishibashi, M
Takahashi, A
Saitou, N
Murray, JC
Saito, S
Nakamura, Y
Niikawa, N
机构
[1] Nagasaki Univ, Grad Sch Biomed Sci, Dept Human Genet, Nagasaki, Japan
[2] Japan Sci & Technol, CREST, Kawaguchi, Japan
[3] Univ Tokyo, Grad Sch Sci, Dept Biol Sci, Tokyo, Japan
[4] Tokyo Inst Technol, Grad Sch Biosci & Biotechnol, Dept Biomol Engn, Yokohama, Kanagawa, Japan
[5] Univ Ryukyus, Sch Med, Dept Med Genet, Okinawa, Japan
[6] Univ Tokyo, Grad Sch Med, Dept Human Genet, Tokyo, Japan
[7] Kagoshima Univ, Ctr Res & Dev, Kagoshima, Japan
[8] Kanebo Cosmet Inc, Cosmet Lab, Odawara, Japan
[9] Nagasaki Univ, Grad Sch Biomed Sci, Dept Radiat Biophys, Nagasaki, Japan
[10] Nagasaki Univ, Grad Sch Biomed Sci, Int Hlth Radiat Res, Nagasaki, Japan
[11] Cent S Univ, Xiangya Hosp, Natl Lab Med Genet China, Changsha, Peoples R China
[12] Keimyung Univ, Sch Med, Hanvit Inst Med Genet, Dept Anat, Taegu, South Korea
[13] Aichi Gakuin Univ, Grad Sch Dent, Nagoya, Aichi, Japan
[14] Hlth Sci Univ Hokkaido, Res Inst Personalized Hlth Sci, Ishikari, Hokkaido, Japan
[15] Univ Calif Irvine, Human Genet Lab, Dept Psychiat & Human Behav, Irvine, CA USA
[16] Karolinska Univ Hosp, Malaria Res Lab, Stockholm, Sweden
[17] Nagasaki Univ, Inst Trop Med, Dept Mol Immunogenet, Nagasaki, Japan
[18] Univ Nacl Asuncion, Inst Invest Ciencias Salud, Dept Biol Mol, Asuncion, Paraguay
[19] Natl Inst Genet, Div Populat Genet, Mishima, Shizuoka, Japan
[20] Univ Iowa, Dept Pediat, Iowa City, IA 52242 USA
[21] RIKEN, SNP Res Ctr, Lab SNP Anal, Tokyo, Japan
[22] Univ Tokyo, Inst Med Sci, Ctr Human Genome, Tokyo, Japan
基金
日本科学技术振兴机构;
关键词
D O I
10.1038/ng1733
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Human earwax consists of wet and dry types. Dry earwax is frequent in East Asians, whereas wet earwax is common in other populations. Here we show that a SNP, 538G -> A (rs17822931), in the ABCC11 gene is responsible for determination of earwax type. The AA genotype corresponds to dry earwax, and GA and GG to wet type. A 27-bp deletion in ABCC11 exon 29 was also found in a few individuals of Asian ancestry. A functional assay demonstrated that cells with allele A show a lower excretory activity for cGMP than those with allele G. The allele A frequency shows a north-south and east-west downward geographical gradient; worldwide, it is highest in Chinese and Koreans, and a common dry-type haplotype is retained among various ethnic populations. These suggest that the allele A arose in northeast Asia and thereafter spread through the world. The 538G -> A SNP is the first example of DNA polymorphism determining a visible genetic trait.
引用
收藏
页码:324 / 330
页数:7
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