Comparative investigations of biopolymer hydration by physicochemical and modeling techniques

被引:51
作者
Durchschlag, H
Zipper, P
机构
[1] Univ Regensburg, Inst Biophys & Phys Biochem, D-93040 Regensburg, Germany
[2] Graz Univ, Inst Chem, A-8010 Graz, Austria
关键词
biopolymer hydration; catalase; computer simulation; hydrodynamic modeling; parameter prediction; X-ray data;
D O I
10.1016/S0301-4622(01)00217-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The comparative investigation of biopolymer hydration by physicochemical techniques, particularly by small-angle X-ray scattering, has shown that the values obtained differ over a wide range., depending on the nature of the polymer and the environmental conditions. In the case of simple proteins, a large number of available data allow the derivation of a realistic average value for the hydration (0.35 g of water per gram of protein). As long as the average properties of proteins are considered, the use of such a default value is sufficient. Modeling approaches may be used advantageously, in order to differentiate between different assumptions and hydration contributions, and to correctly predict hydrodynamic properties of biopolymers on the basis of their three-dimensional structure. Problems of major concern are the positioning and the properties of the water molecules on the biopolymer surface. In this context, different approaches for calculating the molecular volume and surface of biopolymers have been applied, in addition to the development of appropriate hydration algorithms. (C) 2001 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:141 / 157
页数:17
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