Thermal breaking of spanning water networks in the hydration shell of proteins

被引:38
作者
Brovchenko, I [1 ]
Krukau, A [1 ]
Smolin, N [1 ]
Oleinikova, A [1 ]
Geiger, A [1 ]
Winter, R [1 ]
机构
[1] Univ Dortmund, D-44227 Dortmund, Germany
关键词
D O I
10.1063/1.2121708
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The presence of a spanning hydrogen-bonded network of water at the surface of biomolecules is important for their conformational stability, dynamics, and function. We have studied by computer simulations the clustering and percolation of water in the hydration shell of a small elastinlike peptide (ELP) and the medium-size protein staphylococcal nuclease (SNase), in aqueous solution. We have found that in both systems a spanning network of hydration water exists at low temperatures and breaks up with increasing temperature via a quasi-two-dimensional percolation transition. The thermal breaking of the spanning water network occurs at biologically relevant temperatures, in the temperature range, which is close to the temperature of the "inverse temperature transition" of ELP and the unfolding temperature of SNase, respectively. (c) 2005 American Institute of Physics.
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页数:10
相关论文
共 61 条
[1]  
ALADKO LS, 1994, MENDELEEV COMMUN, P67
[2]  
[Anonymous], 2018, INTRO PERCOLATION TH
[3]  
[Anonymous], [No title captured]
[4]  
Balasubramanian S, 2003, CURR SCI INDIA, V85, P1571
[5]   Hydration in protein dynamics and function [J].
Bellissent-Funel, MC .
JOURNAL OF MOLECULAR LIQUIDS, 2000, 84 (01) :39-52
[6]   THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS [J].
BERENDSEN, HJC ;
GRIGERA, JR ;
STRAATSMA, TP .
JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (24) :6269-6271
[7]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[8]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[9]   Molecular dynamics of water at the protein-solvent interface [J].
Bizzarri, AR ;
Cannistraro, S .
JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (26) :6617-6633
[10]   Liquid-liquid phase transitions in supercooled water studied by computer simulations of various water models [J].
Brovchenko, I ;
Geiger, A ;
Oleinikova, A .
JOURNAL OF CHEMICAL PHYSICS, 2005, 123 (04)