Database on the structure of small ribosomal subunit RNA

被引:122
作者
VandePeer, Y [1 ]
Jansen, J [1 ]
DeRijk, P [1 ]
DeWachter, R [1 ]
机构
[1] UNIV ANTWERP,DEPT BIOCHEM,B-2610 ANTWERP,BELGIUM
关键词
D O I
10.1093/nar/25.1.111
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Antwerp database on small ribosomal subunit RNA now offers more than 6000 nucleotide sequences (August 1996). All these sequences are stored in the form of an alignment based on the adopted secondary structure model, which is corroborated by the observation of compensating substitutions in the alignment, Besides the primary and secondary structure information, literature references, accession numbers and detailed taxonomic information are also compiled, For ease of use, the complete database is made available to the scientific community via World Wide Web at URL http://rrna.uia.ac.be/ssu/.
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收藏
页码:111 / 116
页数:6
相关论文
共 28 条
  • [1] Ainsworth GC, 1973, FUNGI ADV TREATISE
  • [2] GenBank
    Benson, DA
    Boguski, M
    Lipman, DJ
    Ostell, J
    [J]. NUCLEIC ACIDS RESEARCH, 1996, 24 (01) : 1 - 5
  • [3] Brusca R.C., 1990, Invertebrates
  • [4] Cronquist A, 1971, INTRO BOT, Vsecond
  • [5] COMPILATION OF SMALL RIBOSOMAL-SUBUNIT RNA SEQUENCES
    DAMS, E
    HENDRIKS, L
    VANDEPEER, Y
    NEEFS, JM
    SMITS, G
    VANDENBEMPT, I
    DEWACHTER, R
    [J]. NUCLEIC ACIDS RESEARCH, 1988, 16 : R87 - R173
  • [6] COMPILATION OF SMALL RIBOSOMAL-SUBUNIT RNA SEQUENCES
    DERIJK, P
    NEEFS, JM
    VANDEPEER, Y
    DEWACHTER, R
    [J]. NUCLEIC ACIDS RESEARCH, 1992, 20 : 2075 - 2089
  • [7] COLLECTION OF SMALL-SUBUNIT (16S- AND 16S-LIKE) RIBOSOMAL-RNA STRUCTURES - 1994
    GUTELL, RR
    [J]. NUCLEIC ACIDS RESEARCH, 1994, 22 (17) : 3502 - 3507
  • [8] LESSONS FROM AN EVOLVING RIBOSOMAL-RNA - 16S AND 23S RIBOSOMAL-RNA STRUCTURES FROM A COMPARATIVE PERSPECTIVE
    GUTELL, RR
    LARSEN, N
    WOESE, CR
    [J]. MICROBIOLOGICAL REVIEWS, 1994, 58 (01) : 10 - 26
  • [9] COMPILATION OF SMALL RIBOSOMAL-SUBUNIT RNA SEQUENCES
    HUYSMANS, E
    DEWACHTER, R
    [J]. NUCLEIC ACIDS RESEARCH, 1986, 14 : R73 - R118
  • [10] THE EARLY EVOLUTION OF EUKARYOTES - A GEOLOGICAL PERSPECTIVE
    KNOLL, AH
    [J]. SCIENCE, 1992, 256 (5057) : 622 - 627