Assembly of fingerprint contigs: parallelized FPC

被引：15

作者：

Ness, SR ^{[1
]}

Terpstra, W ^{[1
]}

Krzywinski, M ^{[1
]}

Marra, MA ^{[1
]}

Jones, SJM ^{[1
]}

机构：

[1] British Columbia Canc Agcy, Genome Sequence Ctr, Vancouver, BC V5Z 4E6, Canada

来源：

BIOINFORMATICS | 2002年 / 18卷 / 03期

关键词：

D O I：

10.1093/bioinformatics/18.3.484

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

One of the more common uses of the program FingerPrint Contigs (FPC) is to assemble random restriction digest 'fingerprints' of overlapping genomic clones into contigs. To improve the rate of assembling contigs from large fingerprint databases we have adapted FPC so that it can be run in parallel on multiple processors and servers. The current version of 'parallelized FPC' has been used in our laboratory to assemble mammalian BAC fingerprint databases, each containing more than 300000 BAC fingerprints.

引用

页码：484 / 485

页数：2

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